Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT3G25140	Arabidopsis thaliana	0.0	1167	560	100.00
ATR_00135G00630	Amborella trichopoda	0.0	885	495	85.86
AT3G02350	Arabidopsis thaliana	0.0	735	555	67.39
OS02G29530	Oryza sativa	0.0	683	486	71.40
OS06G49810	Oryza sativa	4e-174	513	452	53.32
AT3G61130	Arabidopsis thaliana	2e-169	503	451	53.44
ATR_00001G01860	Amborella trichopoda	5e-169	503	490	51.63
OS09G36190	Oryza sativa	4e-168	501	454	52.42
PP00251G00070	Physcomitrella patens	8e-167	499	405	58.02
PP00128G00100	Physcomitrella patens	4e-166	494	489	48.67
AT5G47780	Arabidopsis thaliana	3e-162	483	469	50.11
ATR_00007G00240	Amborella trichopoda	1e-156	461	398	55.53
OS08G23780	Oryza sativa	6e-156	468	408	53.68
PP00021G01350	Physcomitrella patens	7e-154	466	454	51.10
OS09G30280	Oryza sativa	2e-153	463	413	52.06
ATR_00061G00990	Amborella trichopoda	4e-153	462	493	46.45
AT4G38270	Arabidopsis thaliana	3e-152	460	391	54.48
OS06G12280	Oryza sativa	6e-151	450	484	50.21
OS09G36180	Oryza sativa	8e-148	460	433	51.96
OS06G51160	Oryza sativa	7e-147	443	410	52.44
OS10G21890	Oryza sativa	2e-146	445	417	51.56
OS08G38740	Oryza sativa	6e-146	445	407	51.84
OS02G51130	Oryza sativa	1e-143	431	484	48.97
ATR_00003G03940	Amborella trichopoda	2e-143	431	408	50.98
AT1G18580	Arabidopsis thaliana	2e-142	429	407	49.63
ATR_00047G00690	Amborella trichopoda	7e-139	420	407	53.07
PP00053G01090	Physcomitrella patens	9e-139	421	547	43.14
PP00072G00620	Physcomitrella patens	1e-136	416	417	47.96
OS04G54360	Oryza sativa	2e-135	412	409	47.92
PP00507G00030	Physcomitrella patens	1e-132	405	285	63.51
AT2G20810	Arabidopsis thaliana	3e-131	400	497	44.27
AT2G46480	Arabidopsis thaliana	4e-128	392	417	48.20
OS03G30000	Oryza sativa	1e-122	379	474	43.46
ATR_00110G00210	Amborella trichopoda	8e-115	358	416	43.51
PP00016G01710	Physcomitrella patens	2e-111	349	432	43.52
PP00010G00510	Physcomitrella patens	3e-111	349	424	43.40
AT5G54690	Arabidopsis thaliana	9e-111	348	446	40.36
PP00018G00580	Physcomitrella patens	1e-109	345	431	43.16
ATR_00115G00100	Amborella trichopoda	9e-109	343	455	40.00
AT3G01040	Arabidopsis thaliana	3e-106	336	451	41.24
OS12G38930	Oryza sativa	6e-105	333	394	43.91
AT5G15470	Arabidopsis thaliana	2e-104	331	434	42.17
OS03G11330	Oryza sativa	4e-102	327	453	39.74
OS11G37980	Oryza sativa	4e-101	323	415	39.52
AT1G06780	Arabidopsis thaliana	9e-99	318	417	40.29
AT2G30575	Arabidopsis thaliana	2e-95	310	412	39.32
ATR_00002G04990	Amborella trichopoda	5e-89	293	427	41.69
ATR_00068G01060	Amborella trichopoda	1e-82	273	371	39.89
AT3G58790	Arabidopsis thaliana	6e-82	272	455	35.82
ATR_00077G02300	Amborella trichopoda	3e-71	244	422	35.55
OS01G52710	Oryza sativa	1e-67	234	452	30.53
OS11G03160	Oryza sativa	8e-60	215	442	31.22
OS12G02910	Oryza sativa	1e-59	215	442	31.22
OS07G48370	Oryza sativa	2e-57	208	408	32.84
AT2G38650	Arabidopsis thaliana	2e-57	208	407	33.66
OS05G40720	Oryza sativa	1e-56	206	438	30.59
OS03G21250	Oryza sativa	1e-55	203	415	33.73
PP00281G00010	Physcomitrella patens	2e-26	117	194	34.02
ATR_00057G00950	Amborella trichopoda	5e-23	104	343	25.66
AT1G70090	Arabidopsis thaliana	3e-22	102	392	23.21
ATR_00007G03060	Amborella trichopoda	7e-22	101	194	30.41
AT3G06260	Arabidopsis thaliana	1e-21	100	194	30.41
AT1G24170	Arabidopsis thaliana	3e-21	100	322	25.47
AT3G62660	Arabidopsis thaliana	9e-21	97.8	319	26.02
AT4G02130	Arabidopsis thaliana	3e-20	95.9	198	28.79
ATR_00025G01410	Amborella trichopoda	4e-20	95.9	286	26.57
AT1G02720	Arabidopsis thaliana	7e-20	95.5	330	26.36
PP00044G01350	Physcomitrella patens	1e-19	96.3	336	25.89
OS04G44850	Oryza sativa	2e-19	94.0	196	31.63
AT3G28340	Arabidopsis thaliana	5e-19	92.8	363	24.79
PP00010G00270	Physcomitrella patens	8e-19	93.6	310	26.13
OL18G00780	Ostreococcus lucimarinus	2e-18	88.6	198	25.76
PP00080G00620	Physcomitrella patens	4e-18	84.3	49	67.35
ATR_00147G00080	Amborella trichopoda	5e-18	89.7	192	29.69
ATR_00059G01390	Amborella trichopoda	8e-18	89.0	199	30.65
PP00229G00040	Physcomitrella patens	9e-18	89.0	243	25.93
ENSG00000120820	Homo sapiens	1e-17	88.6	196	30.10
PP00078G00980	Physcomitrella patens	1e-17	89.4	312	25.96
PP00029G01020	Physcomitrella patens	6e-17	87.8	312	25.64
PP00129G00380	Physcomitrella patens	2e-16	85.1	192	27.60
ENSMUSG00000021916	Mus musculus	3e-16	84.7	205	26.83
OS03G18890	Oryza sativa	3e-16	84.3	315	26.35
AT1G19300	Arabidopsis thaliana	3e-16	84.0	199	28.64
AT1G13250	Arabidopsis thaliana	1e-15	82.4	194	30.41
PP00004G01540	Physcomitrella patens	1e-15	82.8	175	28.00
OS03G47530	Oryza sativa	3e-15	81.3	194	29.38
AT3G50760	Arabidopsis thaliana	4e-14	77.8	204	28.92
OS02G50600	Oryza sativa	1e-13	76.6	201	27.86
OS03G24510	Oryza sativa	8e-13	73.9	203	29.06
OS07G45260	Oryza sativa	8e-13	73.9	258	26.36
ENSMUSG00000020251	Mus musculus	2e-12	73.2	211	27.49
OS06G13760	Oryza sativa	3e-12	72.0	198	27.78
AA0008G02600	Aureococcus anophagefferens	1e-11	67.8	158	32.91
AA0075G00050	Aureococcus anophagefferens	1e-10	64.7	171	29.82
HE0000G48700	Helicosporidium sp.	7e-06	50.4	114	27.19

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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