Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT2G01850	Arabidopsis thaliana	0.0	698	334	100.00
AT1G14720	Arabidopsis thaliana	0.0	565	334	78.44
ATR_00024G00080	Amborella trichopoda	2e-133	390	297	60.94
OS03G13570	Oryza sativa	2e-133	390	318	60.06
OS10G02770	Oryza sativa	5e-131	384	265	67.17
OS09G23220	Oryza sativa	4e-120	356	279	60.57
AT1G32170	Arabidopsis thaliana	7e-120	356	306	56.86
ATR_00048G00580	Amborella trichopoda	1e-117	349	271	62.36
OS02G03550	Oryza sativa	2e-111	335	282	58.87
OS02G46910	Oryza sativa	7e-109	328	299	57.19
OS03G63760	Oryza sativa	1e-108	328	304	53.29
AT4G18990	Arabidopsis thaliana	6e-106	321	311	51.45
OS10G42670	Oryza sativa	2e-90	280	294	50.34
AT1G10550	Arabidopsis thaliana	3e-85	266	270	45.93
OS03G01800	Oryza sativa	2e-71	231	299	39.13
PP00074G00080	Physcomitrella patens	3e-71	234	252	48.81
PP00005G00910	Physcomitrella patens	1e-70	232	244	48.36
OS10G39840	Oryza sativa	3e-68	223	264	42.05
ATR_00013G00910	Amborella trichopoda	2e-65	212	223	46.64
AT4G13090	Arabidopsis thaliana	5e-65	214	268	41.79
OS07G29750	Oryza sativa	8e-64	211	265	41.51
ATR_00082G00420	Amborella trichopoda	5e-63	208	264	40.53
AT4G13080	Arabidopsis thaliana	6e-63	208	264	39.39
OS02G57770	Oryza sativa	6e-63	209	244	45.08
AT1G11545	Arabidopsis thaliana	1e-60	203	298	36.58
AT3G25050	Arabidopsis thaliana	4e-59	198	265	38.87
AT3G44990	Arabidopsis thaliana	1e-58	197	268	39.18
AT5G65730	Arabidopsis thaliana	2e-58	196	281	38.79
ATR_00019G03550	Amborella trichopoda	3e-58	196	285	39.65
ATR_00004G02430	Amborella trichopoda	4e-58	196	285	38.25
AT2G06850	Arabidopsis thaliana	1e-57	194	295	36.27
AT5G13870	Arabidopsis thaliana	2e-57	194	242	40.08
PP00004G00260	Physcomitrella patens	3e-57	194	267	39.33
PP00309G00220	Physcomitrella patens	6e-56	191	307	35.83
AT2G36870	Arabidopsis thaliana	2e-55	189	264	39.02
PP00168G00160	Physcomitrella patens	6e-55	187	296	38.18
PP00004G00240	Physcomitrella patens	7e-55	187	293	37.88
ATR_00016G02940	Amborella trichopoda	2e-54	186	268	36.94
OS11G33270	Oryza sativa	3e-54	186	292	35.27
AT4G37800	Arabidopsis thaliana	3e-54	186	289	37.37
PP00309G00230	Physcomitrella patens	6e-54	185	295	36.27
OS06G48180	Oryza sativa	9e-54	184	292	35.62
PP00168G00050	Physcomitrella patens	4e-53	184	270	34.81
AT4G03210	Arabidopsis thaliana	1e-52	181	245	39.59
ATR_00026G01160	Amborella trichopoda	3e-52	180	289	36.68
OS07G34580	Oryza sativa	1e-51	179	294	34.69
AT5G57550	Arabidopsis thaliana	3e-51	177	291	34.36
ATR_00019G03570	Amborella trichopoda	2e-50	175	289	35.64
AT3G23730	Arabidopsis thaliana	4e-50	175	308	33.77
PP00195G00150	Physcomitrella patens	5e-50	175	271	35.06
PP00309G00140	Physcomitrella patens	8e-50	174	270	35.93
OS06G48200	Oryza sativa	9e-50	174	279	34.05
ATR_00026G01070	Amborella trichopoda	1e-49	173	246	39.84
OS06G48160	Oryza sativa	1e-49	173	248	37.90
ATR_00062G00020	Amborella trichopoda	1e-49	173	295	33.22
PP00193G00050	Physcomitrella patens	3e-49	174	340	33.82
OS06G13040	Oryza sativa	4e-49	172	269	36.80
AT2G14620	Arabidopsis thaliana	8e-49	171	292	35.27
PP00618G00010	Physcomitrella patens	1e-48	174	325	33.85
PP00026G00650	Physcomitrella patens	1e-48	171	292	33.90
PP00213G00650	Physcomitrella patens	2e-48	171	300	36.00
ATR_00453G00010	Amborella trichopoda	3e-48	171	300	33.00
OS08G13980	Oryza sativa	4e-48	169	255	38.04
PP00272G00150	Physcomitrella patens	5e-48	169	251	35.46
AT4G25810	Arabidopsis thaliana	5e-48	169	290	33.10
ATR_00062G00050	Amborella trichopoda	5e-48	169	265	34.34
OS04G51460	Oryza sativa	6e-48	169	257	35.02
PP00291G00470	Physcomitrella patens	8e-48	169	278	35.25
OS08G13920	Oryza sativa	1e-47	168	258	37.98
OS04G51450	Oryza sativa	2e-47	168	252	36.90
AT4G14130	Arabidopsis thaliana	5e-47	166	280	33.57
OS06G48170	Oryza sativa	8e-47	166	273	34.07
AT5G57560	Arabidopsis thaliana	1e-46	165	268	34.70
ATR_00065G01770	Amborella trichopoda	3e-46	164	309	34.95
AT5G57530	Arabidopsis thaliana	4e-46	164	268	34.70
AT2G18800	Arabidopsis thaliana	4e-46	164	306	32.68
OS08G14200	Oryza sativa	9e-46	163	287	33.45
OS08G14210	Oryza sativa	3e-45	164	266	35.71
PP00410G00130	Physcomitrella patens	3e-45	162	254	36.61
PP00122G00290	Physcomitrella patens	3e-45	162	307	35.50
PP00019G00220	Physcomitrella patens	5e-45	161	274	36.13
ATR_00065G01750	Amborella trichopoda	6e-45	161	301	34.22
AT5G57540	Arabidopsis thaliana	8e-45	160	268	33.96
AT4G30270	Arabidopsis thaliana	4e-44	158	291	32.30
OS04G51520	Oryza sativa	2e-43	157	294	33.67
AT4G25820	Arabidopsis thaliana	3e-43	156	275	33.82
ATR_00019G03590	Amborella trichopoda	2e-42	155	278	32.37
PP00486G00100	Physcomitrella patens	3e-42	154	250	36.40
PP00486G00080	Physcomitrella patens	3e-42	154	250	36.40
AT4G30290	Arabidopsis thaliana	4e-42	153	289	34.60
AT5G48070	Arabidopsis thaliana	7e-42	152	244	34.84
ATR_00026G01110	Amborella trichopoda	1e-41	150	212	40.09
AT4G30280	Arabidopsis thaliana	2e-41	151	269	36.06
AT4G28850	Arabidopsis thaliana	2e-41	152	266	32.33
AT1G65310	Arabidopsis thaliana	3e-41	151	266	35.34
PP00011G01530	Physcomitrella patens	4e-40	149	306	31.70
ATR_00026G01130	Amborella trichopoda	2e-38	140	170	44.71
PP00141G00620	Physcomitrella patens	3e-38	143	247	36.84
PP00309G00200	Physcomitrella patens	1e-37	140	229	34.50
PP00156G00440	Physcomitrella patens	1e-37	141	283	30.74
PP00156G00420	Physcomitrella patens	1e-37	141	283	30.74
PP00048G00500	Physcomitrella patens	3e-37	141	267	32.96
PP00081G01240	Physcomitrella patens	5e-37	140	256	33.59
OS02G17880	Oryza sativa	3e-36	138	272	32.35
ATR_00062G00060	Amborella trichopoda	3e-36	135	188	36.17
PP00346G00070	Physcomitrella patens	5e-35	136	261	32.57
PP00089G00910	Physcomitrella patens	6e-35	134	268	30.97
ATR_00109G01360	Amborella trichopoda	3e-33	127	190	35.79
OS02G17900	Oryza sativa	5e-33	129	258	31.01
AT3G48580	Arabidopsis thaliana	9e-33	128	262	30.15
OS06G22919	Oryza sativa	3e-32	127	205	33.17
OS04G51510	Oryza sativa	3e-29	118	252	29.37
ATR_00026G01150	Amborella trichopoda	4e-29	115	128	43.75
PP00353G00180	Physcomitrella patens	5e-26	108	227	33.04
PP00089G00960	Physcomitrella patens	1e-24	105	184	36.41
ATR_00069G00950	Amborella trichopoda	3e-24	103	185	35.14
ATR_00019G03580	Amborella trichopoda	2e-22	96.3	126	37.30
OS03G02610	Oryza sativa	5e-21	95.5	182	36.26
PP00024G01140	Physcomitrella patens	3e-18	89.0	180	35.00
PP00037G01500	Physcomitrella patens	5e-18	88.6	172	36.05
ATR_01729G00020	Amborella trichopoda	2e-17	79.7	69	52.17
ATR_00055G01550	Amborella trichopoda	5e-15	74.7	113	32.74
ATR_00004G02620	Amborella trichopoda	5e-11	63.2	70	48.57
PP00002G02710	Physcomitrella patens	2e-10	61.2	53	49.06
YLR213C	Saccharomyces cerevisiae strain S288C	2e-09	62.4	163	30.67
YGR189C	Saccharomyces cerevisiae strain S288C	9e-09	60.5	171	26.32
ATR_00062G00010	Amborella trichopoda	2e-07	53.9	88	36.36
ATR_00337G00020	Amborella trichopoda	2e-07	53.1	88	34.09

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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