Functional clusters

Information

  • Type Gene Ontology
  • Description system development

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Allium sativum chr8 3 CH_asa_422 7 9 0.0000262534
Secale cereale GWHASIY00000001 3 CH_sce_767 10 26 0.000702714
Allium sativum chr8 4 CH_asa_422 7 9 0.0000262534
Secale cereale GWHASIY00000001 4 CH_sce_767 10 26 0.000702714

Available child term results

Ontology identifier Description Number of clusters
GO:0009793 embryo development ending in seed dormancy 12
GO:0009835 fruit ripening 2
GO:0009901 anther dehiscence 2
GO:0009908 flower development 8
GO:0009909 regulation of flower development 8
GO:0009910 negative regulation of flower development 20
GO:0009911 positive regulation of flower development 8
GO:0009960 endosperm development 16
GO:0010015 root morphogenesis 2
GO:0010016 shoot system morphogenesis 2
GO:0010054 trichoblast differentiation 2
GO:0010062 negative regulation of trichoblast fate specification 2
GO:0010063 positive regulation of trichoblast fate specification 2
GO:0010064 embryonic shoot morphogenesis 2
GO:0010068 protoderm histogenesis 2
GO:0010071 root meristem specification 2
GO:0010082 regulation of root meristem growth 2
GO:0010086 embryonic root morphogenesis 4
GO:0010094 specification of carpel identity 12
GO:0010097 specification of stamen identity 2
GO:0010102 lateral root morphogenesis 6
GO:0010150 leaf senescence 4
GO:0010214 seed coat development 2
GO:0010227 floral organ abscission 2
GO:0010231 maintenance of seed dormancy 2
GO:0010234 anther wall tapetum cell fate specification 6
GO:0010254 nectary development 2
GO:0010311 lateral root formation 6
GO:0010434 bract formation 4
GO:0010442 guard cell morphogenesis 8
GO:0010449 root meristem growth 2
GO:0010588 cotyledon vascular tissue pattern formation 8
GO:0035670 plant-type ovary development 2
GO:0045765 regulation of angiogenesis 6
GO:0048316 seed development 2
GO:0048317 seed morphogenesis 12
GO:0048354 mucilage biosynthetic process involved in seed coat development 2
GO:0048359 mucilage metabolic process involved in seed coat development 2
GO:0048364 root development 4
GO:0048440 carpel development 2
GO:0048444 floral organ morphogenesis 2
GO:0048451 petal formation 4
GO:0048455 stamen formation 2
GO:0048457 floral whorl morphogenesis 2
GO:0048459 floral whorl structural organization 2
GO:0048461 flower structural organization 12
GO:0048462 carpel formation 2
GO:0048481 plant ovule development 2
GO:0048482 plant ovule morphogenesis 2
GO:0048497 maintenance of floral organ identity 2
GO:0048527 lateral root development 2
GO:0048528 post-embryonic root development 2
GO:0048573 photoperiodism, flowering 2
GO:0048574 long-day photoperiodism, flowering 2
GO:0048575 short-day photoperiodism, flowering 2
GO:0048576 positive regulation of short-day photoperiodism, flowering 2
GO:0048577 negative regulation of short-day photoperiodism, flowering 4
GO:0048586 regulation of long-day photoperiodism, flowering 2
GO:0048587 regulation of short-day photoperiodism, flowering 10
GO:0048608 reproductive structure development 2
GO:0048653 anther development 2
GO:0048654 anther morphogenesis 22
GO:0048658 anther wall tapetum development 2
GO:0048700 acquisition of desiccation tolerance in seed 44
GO:0048766 root hair initiation 6
GO:0048767 root hair elongation 32
GO:0048825 cotyledon development 4
GO:0048829 root cap development 4
GO:0048831 regulation of shoot system development 2
GO:0060862 negative regulation of floral organ abscission 16
GO:0062210 shoot regeneration 4
GO:0062211 root regeneration 2
GO:0080022 primary root development 4
GO:0080060 integument development 2
GO:0080086 stamen filament development 24
GO:0080112 seed growth 4
GO:0080113 regulation of seed growth 4
GO:0080127 fruit septum development 6
GO:0080147 root hair cell development 2
GO:0080166 stomium development 2
GO:0080181 lateral root branching 4
GO:0090057 root radial pattern formation 52
GO:0090506 axillary shoot meristem initiation 4
GO:0090567 reproductive shoot system development 2
GO:0090696 post-embryonic plant organ development 2
GO:0090708 specification of plant organ axis polarity 4
GO:0098755 maintenance of seed dormancy by absisic acid 4
GO:0120195 positive regulation of anther dehiscence 2
GO:0140547 acquisition of seed longevity 4
GO:1900055 regulation of leaf senescence 2
GO:1900057 positive regulation of leaf senescence 12
GO:1901332 negative regulation of lateral root development 2
GO:1901333 positive regulation of lateral root development 2
GO:1901371 regulation of leaf morphogenesis 18
GO:1902890 regulation of root hair elongation 2
GO:1902892 positive regulation of root hair elongation 2
GO:1990058 fruit replum development 2
GO:1990059 fruit valve development 2
GO:2000014 regulation of endosperm development 2
GO:2000025 regulation of leaf formation 2
GO:2000028 regulation of photoperiodism, flowering 4
GO:2000032 regulation of secondary shoot formation 4
GO:2000033 regulation of seed dormancy process 22
GO:2000034 regulation of seed maturation 2
GO:2000692 negative regulation of seed maturation 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001