Functional clusters
Information
- Type Gene Ontology
- Description root radial pattern formation
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aegilops tauschii | 7D | 3 | CH_ata_57 | 5 | 12 | 0.0000000000698248 |
| Digitaria exilis | Dexi_CM05836_chr09B | 3 | CH_dex_348 | 3 | 3 | 0.00000612189 |
| Digitaria exilis | Dexi_CM05836_chr09A | 3 | CH_dex_349 | 3 | 3 | 0.00000612189 |
| Eragrostis curvula | 3 | 3 | CH_ecu_423 | 3 | 4 | 0.0000014881 |
| Hordeum vulgare | chr6H | 3 | CH_hvu_253 | 3 | 5 | 0.0000138293 |
| Lolium perenne | Lp_chr2_0 | 3 | CH_lpe_24 | 6 | 7 | 2.93198e-16 |
| Lolium perenne | Lp_chr4_0 | 3 | CH_lpe_89 | 4 | 5 | 0.00000000298065 |
| Magnolia biondii | Chr18 | 3 | CH_mbi_222 | 3 | 3 | 0.000000198133 |
| Miscanthus sinensis | Chr02 | 3 | CH_msi_111 | 4 | 4 | 0.00000000175768 |
| Miscanthus sinensis | Chr01 | 3 | CH_msi_309 | 3 | 4 | 0.00001819 |
| Oryza sativa Kitaake | Chr3 | 3 | CH_osak_220 | 3 | 3 | 0.00000216228 |
| Oryza sativa Kitaake | Chr4 | 3 | CH_osak_221 | 3 | 3 | 0.00000216228 |
| Oryza sativa ssp. japonica | chr03 | 3 | CH_osa_172 | 3 | 3 | 0.000000920439 |
| Panicum hallii | Chr05 | 3 | CH_pha_191 | 3 | 3 | 0.0000034445 |
| Sorghum bicolor | Chr01 | 3 | CH_sbi_133 | 4 | 7 | 0.0000000648174 |
| Secale cereale | GWHASIY00000004 | 3 | CH_sce_256 | 4 | 8 | 0.000000469857 |
| Saccharum spontaneum | Chr1D | 3 | CH_ssp_158 | 4 | 4 | 0.00000000335144 |
| Setaria viridis | Chr_03 | 3 | CH_svi_235 | 3 | 3 | 0.00000277711 |
| Triticum aestivum | Chr6D | 3 | CH_tae_1157 | 3 | 7 | 0.000210671 |
| Triticum aestivum | Chr4B | 3 | CH_tae_805 | 3 | 3 | 0.00000602598 |
| Triticum dicoccoides | 7B | 3 | CH_tdi_209 | 4 | 13 | 0.000000271364 |
| Triticum dicoccoides | 4A | 3 | CH_tdi_259 | 3 | 3 | 0.00000150688 |
| Triticum turgidum | chr7A | 3 | CH_ttu_268 | 4 | 9 | 0.000000273636 |
| Triticum turgidum | chr4B | 3 | CH_ttu_377 | 3 | 3 | 0.00000535379 |
| Zea mays B73 | 5 | 3 | CH_zma_171 | 3 | 4 | 0.0000208558 |
| Zea mays B73 | 1 | 3 | CH_zma_59 | 4 | 4 | 0.00000000240037 |
| Aegilops tauschii | 7D | 4 | CH_ata_57 | 5 | 12 | 0.0000000000698248 |
| Digitaria exilis | Dexi_CM05836_chr09B | 4 | CH_dex_348 | 3 | 3 | 0.00000612189 |
| Digitaria exilis | Dexi_CM05836_chr09A | 4 | CH_dex_349 | 3 | 3 | 0.00000612189 |
| Eragrostis curvula | 3 | 4 | CH_ecu_423 | 3 | 4 | 0.0000014881 |
| Hordeum vulgare | chr6H | 4 | CH_hvu_253 | 3 | 5 | 0.0000138293 |
| Lolium perenne | Lp_chr2_0 | 4 | CH_lpe_24 | 6 | 7 | 2.93198e-16 |
| Lolium perenne | Lp_chr4_0 | 4 | CH_lpe_89 | 4 | 5 | 0.00000000298065 |
| Magnolia biondii | Chr18 | 4 | CH_mbi_222 | 3 | 3 | 0.000000198133 |
| Miscanthus sinensis | Chr02 | 4 | CH_msi_111 | 4 | 4 | 0.00000000175768 |
| Miscanthus sinensis | Chr01 | 4 | CH_msi_309 | 3 | 4 | 0.00001819 |
| Oryza sativa Kitaake | Chr3 | 4 | CH_osak_220 | 3 | 3 | 0.00000216228 |
| Oryza sativa Kitaake | Chr4 | 4 | CH_osak_221 | 3 | 3 | 0.00000216228 |
| Oryza sativa ssp. japonica | chr03 | 4 | CH_osa_172 | 3 | 3 | 0.000000920439 |
| Panicum hallii | Chr05 | 4 | CH_pha_191 | 3 | 3 | 0.0000034445 |
| Sorghum bicolor | Chr01 | 4 | CH_sbi_133 | 4 | 7 | 0.0000000648174 |
| Secale cereale | GWHASIY00000004 | 4 | CH_sce_256 | 4 | 8 | 0.000000469857 |
| Saccharum spontaneum | Chr1D | 4 | CH_ssp_158 | 4 | 4 | 0.00000000335144 |
| Setaria viridis | Chr_03 | 4 | CH_svi_235 | 3 | 3 | 0.00000277711 |
| Triticum aestivum | Chr6D | 4 | CH_tae_1157 | 3 | 7 | 0.000210671 |
| Triticum aestivum | Chr4B | 4 | CH_tae_805 | 3 | 3 | 0.00000602598 |
| Triticum dicoccoides | 7B | 4 | CH_tdi_209 | 4 | 13 | 0.000000271364 |
| Triticum dicoccoides | 4A | 4 | CH_tdi_259 | 3 | 3 | 0.00000150688 |
| Triticum turgidum | chr7A | 4 | CH_ttu_268 | 4 | 9 | 0.000000273636 |
| Triticum turgidum | chr4B | 4 | CH_ttu_377 | 3 | 3 | 0.00000535379 |
| Zea mays B73 | 5 | 4 | CH_zma_171 | 3 | 4 | 0.0000208558 |
| Zea mays B73 | 1 | 4 | CH_zma_59 | 4 | 4 | 0.00000000240037 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |