Functional clusters

Information

  • Type Gene Ontology
  • Description negative regulation of cellular process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Magnolia biondii Chr19 3 CH_mbi_660 9 41 0.000694722
Magnolia biondii Chr19 4 CH_mbi_660 9 41 0.000694722

Available child term results

Ontology identifier Description Number of clusters
GO:0000077 DNA damage checkpoint signaling 4
GO:0000122 negative regulation of transcription by RNA polymerase II 8
GO:0000183 rDNA heterochromatin assembly 2
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 2
GO:0006342 chromatin silencing 4
GO:0006346 DNA methylation-dependent heterochromatin assembly 2
GO:0006348 chromatin silencing at telomere 2
GO:0007026 negative regulation of microtubule depolymerization 2
GO:0007094 mitotic spindle assembly checkpoint signaling 4
GO:0007095 mitotic G2 DNA damage checkpoint signaling 4
GO:0008285 negative regulation of cell population proliferation 78
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 20
GO:0010062 negative regulation of trichoblast fate specification 2
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010323 negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 2
GO:0010373 negative regulation of gibberellin biosynthetic process 2
GO:0010423 negative regulation of brassinosteroid biosynthetic process 2
GO:0010466 negative regulation of peptidase activity 10
GO:0010507 negative regulation of autophagy 2
GO:0010951 negative regulation of endopeptidase activity 6
GO:0016480 negative regulation of transcription by RNA polymerase III 4
GO:0031327 negative regulation of cellular biosynthetic process 2
GO:0031508 pericentric heterochromatin assembly 6
GO:0031567 mitotic cell size control checkpoint signaling 4
GO:0031936 negative regulation of chromatin silencing 2
GO:0031937 positive regulation of chromatin silencing 2
GO:0032055 negative regulation of translation in response to stress 2
GO:0033234 negative regulation of protein sumoylation 2
GO:0034051 negative regulation of plant-type hypersensitive response 2
GO:0035024 negative regulation of Rho protein signal transduction 2
GO:0035278 miRNA mediated inhibition of translation 60
GO:0042989 sequestering of actin monomers 4
GO:0043066 negative regulation of apoptotic process 4
GO:0043069 negative regulation of programmed cell death 2
GO:0043407 negative regulation of MAP kinase activity 4
GO:0045014 carbon catabolite repression of transcription by glucose 4
GO:0045128 negative regulation of reciprocal meiotic recombination 2
GO:0045717 negative regulation of fatty acid biosynthetic process 2
GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity 2
GO:0045839 negative regulation of mitotic nuclear division 4
GO:0045841 negative regulation of mitotic metaphase/anaphase transition 2
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045910 negative regulation of DNA recombination 24
GO:0048255 mRNA stabilization 2
GO:0048497 maintenance of floral organ identity 2
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation 2
GO:0051016 barbed-end actin filament capping 2
GO:0051129 negative regulation of cellular component organization 2
GO:0051511 negative regulation of unidimensional cell growth 6
GO:0051573 negative regulation of histone H3-K9 methylation 6
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 2
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061158 3'-UTR-mediated mRNA destabilization 2
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 6
GO:0080037 negative regulation of cytokinin-activated signaling pathway 18
GO:0090344 negative regulation of cell aging 4
GO:0090356 negative regulation of auxin metabolic process 2
GO:0090359 negative regulation of abscisic acid biosynthetic process 10
GO:1900033 negative regulation of trichome patterning 4
GO:1900070 negative regulation of cellular hyperosmotic salinity response 6
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900186 negative regulation of clathrin-dependent endocytosis 6
GO:1900364 negative regulation of mRNA polyadenylation 8
GO:1900369 negative regulation of RNA interference 4
GO:1900458 negative regulation of brassinosteroid mediated signaling pathway 2
GO:1901017 negative regulation of potassium ion transmembrane transporter activity 4
GO:1901181 negative regulation of cellular response to caffeine 2
GO:1901347 negative regulation of secondary cell wall biogenesis 2
GO:1901799 negative regulation of proteasomal protein catabolic process 6
GO:1901918 negative regulation of exoribonuclease activity 2
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 6
GO:1902006 negative regulation of proline biosynthetic process 2
GO:1902457 negative regulation of stomatal opening 6
GO:1903427 negative regulation of reactive oxygen species biosynthetic process 18
GO:1903647 negative regulation of chlorophyll catabolic process 6
GO:1904667 negative regulation of ubiquitin protein ligase activity 2
GO:1905775 negative regulation of DNA helicase activity 12
GO:2000042 negative regulation of double-strand break repair via homologous recombination 6
GO:2000083 negative regulation of L-ascorbic acid biosynthetic process 4
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 14
GO:2000117 negative regulation of cysteine-type endopeptidase activity 16
GO:2000134 negative regulation of G1/S transition of mitotic cell cycle 2
GO:2000143 negative regulation of DNA-templated transcription, initiation 2
GO:2000469 negative regulation of peroxidase activity 4
GO:2001007 negative regulation of cellulose biosynthetic process 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001