Functional clusters

Information

  • Type Gene Ontology
  • Description lyase activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cenchrus purpureus GWHAORA00000003 3 CH_cpu_60 19 53 3.40698e-17
Phyllostachys edulis hic_scaffold_18 3 CH_ped_107 7 7 0.0000000029124
Phyllostachys edulis hic_scaffold_22 3 CH_ped_241 6 8 0.00000621364
Populus trichocarpa Chr04 3 CH_ptr_372 7 20 0.000166803
Setaria italica scaffold_6 3 CH_sit_73 12 30 0.00000000000656777
Saccharum spontaneum Chr6D 3 CH_ssp_30 11 12 3.81024e-16
Setaria viridis Chr_09 3 CH_svi_428 10 80 0.000409631
Setaria viridis Chr_06 3 CH_svi_87 8 10 0.000000000204862
Zoysia japonica ssp. nagirizaki Zjn_sc00071.1 3 CH_zjn_11 8 11 0.0000000000359187
Cenchrus purpureus GWHAORA00000003 4 CH_cpu_60 19 53 3.40698e-17
Phyllostachys edulis hic_scaffold_18 4 CH_ped_107 7 7 0.0000000029124
Phyllostachys edulis hic_scaffold_22 4 CH_ped_241 6 8 0.00000621364
Populus trichocarpa Chr04 4 CH_ptr_372 7 20 0.000166803
Setaria italica scaffold_6 4 CH_sit_73 12 30 0.00000000000656777
Saccharum spontaneum Chr6D 4 CH_ssp_30 11 12 3.81024e-16
Setaria viridis Chr_09 4 CH_svi_428 10 80 0.000409631
Setaria viridis Chr_06 4 CH_svi_87 8 10 0.000000000204862
Zoysia japonica ssp. nagirizaki Zjn_sc00071.1 4 CH_zjn_11 8 11 0.0000000000359187

Available child term results

Ontology identifier Description Number of clusters
GO:0003839 gamma-glutamylcyclotransferase activity 12
GO:0003855 3-dehydroquinate dehydratase activity 6
GO:0003856 3-dehydroquinate synthase activity 16
GO:0003861 3-isopropylmalate dehydratase activity 6
GO:0003913 DNA photolyase activity 2
GO:0003914 DNA (6-4) photolyase activity 2
GO:0004014 adenosylmethionine decarboxylase activity 4
GO:0004016 adenylate cyclase activity 14
GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity 6
GO:0004049 anthranilate synthase activity 2
GO:0004056 argininosuccinate lyase activity 26
GO:0004089 carbonate dehydratase activity 66
GO:0004107 chorismate synthase activity 10
GO:0004121 cystathionine beta-lyase activity 4
GO:0004150 dihydroneopterin aldolase activity 4
GO:0004163 diphosphomevalonate decarboxylase activity 2
GO:0004300 enoyl-CoA hydratase activity 2
GO:0004325 ferrochelatase activity 12
GO:0004332 fructose-bisphosphate aldolase activity 14
GO:0004351 glutamate decarboxylase activity 26
GO:0004383 guanylate cyclase activity 8
GO:0004408 holocytochrome-c synthase activity 2
GO:0004419 hydroxymethylglutaryl-CoA lyase activity 12
GO:0004425 indole-3-glycerol-phosphate synthase activity 4
GO:0004451 isocitrate lyase activity 10
GO:0004462 lactoylglutathione lyase activity 10
GO:0004490 methylglutaconyl-CoA hydratase activity 42
GO:0004590 orotidine-5'-phosphate decarboxylase activity 10
GO:0004609 phosphatidylserine decarboxylase activity 20
GO:0004611 phosphoenolpyruvate carboxykinase activity 2
GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity 20
GO:0004633 phosphopantothenoylcysteine decarboxylase activity 8
GO:0004634 phosphopyruvate hydratase activity 10
GO:0004638 phosphoribosylaminoimidazole carboxylase activity 2
GO:0004655 porphobilinogen synthase activity 6
GO:0004664 prephenate dehydratase activity 2
GO:0004730 pseudouridylate synthase activity 2
GO:0004737 pyruvate decarboxylase activity 6
GO:0004793 threonine aldolase activity 26
GO:0004794 L-threonine ammonia-lyase activity 8
GO:0004795 threonine synthase activity 2
GO:0004834 tryptophan synthase activity 20
GO:0004853 uroporphyrinogen decarboxylase activity 4
GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity 2
GO:0008446 GDP-mannose 4,6-dehydratase activity 8
GO:0008460 dTDP-glucose 4,6-dehydratase activity 4
GO:0008732 L-allo-threonine aldolase activity 2
GO:0008792 arginine decarboxylase activity 14
GO:0008836 diaminopimelate decarboxylase activity 8
GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase activity 4
GO:0008935 1,4-dihydroxy-2-naphthoyl-CoA synthase activity 8
GO:0008948 oxaloacetate decarboxylase activity 2
GO:0008964 phosphoenolpyruvate carboxylase activity 10
GO:0009899 ent-kaurene synthase activity 54
GO:0009978 allene oxide synthase activity 14
GO:0010298 dihydrocamalexic acid decarboxylase activity 20
GO:0010333 terpene synthase activity 248
GO:0016508 long-chain-enoyl-CoA hydratase activity 6
GO:0016830 carbon-carbon lyase activity 2
GO:0016831 carboxy-lyase activity 10
GO:0016832 aldehyde-lyase activity 2
GO:0016838 carbon-oxygen lyase activity, acting on phosphates 4
GO:0016841 ammonia-lyase activity 6
GO:0016842 amidine-lyase activity 4
GO:0016844 strictosidine synthase activity 84
GO:0016846 carbon-sulfur lyase activity 44
GO:0016984 ribulose-bisphosphate carboxylase activity 2
GO:0018812 3-hydroxyacyl-CoA dehydratase activity 8
GO:0019148 D-cysteine desulfhydrase activity 4
GO:0019171 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity 6
GO:0019172 glyoxalase III activity 8
GO:0030570 pectate lyase activity 30
GO:0033897 ribonuclease T2 activity 64
GO:0033984 indole-3-glycerol-phosphate lyase activity 46
GO:0033987 2-hydroxyisoflavanone dehydratase activity 6
GO:0034002 (R)-limonene synthase activity 4
GO:0034007 S-linalool synthase activity 12
GO:0036469 L-tryptophan decarboxylase activity 42
GO:0043722 4-hydroxyphenylacetate decarboxylase activity 10
GO:0045548 phenylalanine ammonia-lyase activity 86
GO:0046570 methylthioribulose 1-phosphate dehydratase activity 2
GO:0046593 mandelonitrile lyase activity 6
GO:0047443 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity 4
GO:0047453 ATP-dependent NAD(P)H-hydrate dehydratase activity 2
GO:0047720 indoleacetaldoxime dehydratase activity 4
GO:0047769 arogenate dehydratase activity 10
GO:0047987 hydroperoxide dehydratase activity 2
GO:0048040 UDP-glucuronate decarboxylase activity 2
GO:0050017 L-3-cyanoalanine synthase activity 8
GO:0050080 malonyl-CoA decarboxylase activity 4
GO:0050377 UDP-glucose 4,6-dehydratase activity 12
GO:0050551 myrcene synthase activity 4
GO:0051266 sirohydrochlorin ferrochelatase activity 4
GO:0052578 alpha-farnesene synthase activity 14
GO:0052684 L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity 2
GO:0052855 ADP-dependent NAD(P)H-hydrate dehydratase activity 2
GO:0061929 gamma-glutamylaminecyclotransferase activity 4
GO:0071771 aldehyde decarbonylase activity 12
GO:0080013 (E,E)-geranyllinalool synthase activity 6
GO:0080016 (-)-E-beta-caryophyllene synthase activity 2
GO:0080108 S-alkylthiohydroximate lyase activity 18
GO:0102158 very-long-chain 3-hydroxyacyl-CoA dehydratase activity 4
GO:0102210 rhamnogalacturonan endolyase activity 2
GO:0102521 tRNA-4-demethylwyosine synthase activity 2
GO:0102878 (+)-alpha-barbatene synthase activity 12

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001