Functional clusters
Information
- Type Gene Ontology
- Description phenylalanine ammonia-lyase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr8 | 3 | CH_asa_104 | 4 | 8 | 0.0000000000611073 |
| Aegilops tauschii | 2D | 3 | CH_ata_82 | 4 | 5 | 0.00000000325897 |
| Brachypodium distachyon | Bd3 | 3 | CH_bdi_50 | 4 | 4 | 0.000000000246231 |
| Cenchrus purpureus | GWHAORA00000013 | 3 | CH_cpu_107 | 5 | 6 | 0.000000000000352098 |
| Cenchrus purpureus | GWHAORA00000005 | 3 | CH_cpu_182 | 4 | 4 | 0.000000000271219 |
| Digitaria exilis | Dexi_CM05836_chr01A | 3 | CH_dex_160 | 4 | 8 | 0.00000000258578 |
| Digitaria exilis | Dexi_CM05836_chr01B | 3 | CH_dex_251 | 3 | 3 | 0.00000027644 |
| Eragrostis curvula | 1 | 3 | CH_ecu_194 | 4 | 5 | 0.000000000110158 |
| Eragrostis curvula | Contig30 | 3 | CH_ecu_225 | 4 | 7 | 0.000000000770955 |
| Hordeum vulgare | chr2H | 3 | CH_hvu_131 | 4 | 8 | 0.0000000191463 |
| Hordeum vulgare | chr6H | 3 | CH_hvu_248 | 3 | 5 | 0.0000112366 |
| Lolium perenne | Lp_chr3_0 | 3 | CH_lpe_36 | 5 | 6 | 0.000000000000144232 |
| Lolium perenne | Lp_chr2_0 | 3 | CH_lpe_83 | 4 | 6 | 0.00000000203923 |
| Marchantia polymorpha | scaffold_70 | 3 | CH_mpo_23 | 5 | 11 | 0.000000000237776 |
| Oryza alta | GWHAZTO00000014 | 3 | CH_oal_107 | 4 | 7 | 0.000000000425228 |
| Oryza brachyantha | 2 | 3 | CH_obr_32 | 4 | 5 | 0.000000000111895 |
| Oryza sativa ssp. indica | Chr2 | 3 | CH_osaindica_145 | 3 | 4 | 0.000000560415 |
| Oryza sativa Kitaake | Chr2 | 3 | CH_osak_94 | 4 | 4 | 0.00000000011235 |
| Oryza sativa ssp. japonica | chr02 | 3 | CH_osa_84 | 4 | 6 | 0.000000000835039 |
| Oropetium thomaeum | Chromosome_1 | 3 | CH_oth_26 | 4 | 6 | 0.000000000568039 |
| Phyllostachys edulis | hic_scaffold_3 | 3 | CH_ped_187 | 3 | 4 | 0.000000836668 |
| Panicum hallii | Chr01 | 3 | CH_pha_33 | 5 | 6 | 0.0000000000000287382 |
| Populus trichocarpa | Chr10 | 3 | CH_ptr_457 | 2 | 2 | 0.000578001 |
| Sorghum bicolor | Chr04 | 3 | CH_sbi_34 | 5 | 5 | 0.00000000000000497666 |
| Secale cereale | GWHASIY00000001 | 3 | CH_sce_22 | 7 | 7 | 3.37291e-19 |
| Secale cereale | GWHASIY00000002 | 3 | CH_sce_363 | 3 | 3 | 0.00000715165 |
| Setaria italica | scaffold_1 | 3 | CH_sit_45 | 5 | 5 | 0.0000000000000214559 |
| Saccharum spontaneum | Chr4A | 3 | CH_ssp_14 | 7 | 8 | 1.03195e-19 |
| Saccharum spontaneum | Chr4B | 3 | CH_ssp_367 | 3 | 3 | 0.00000249761 |
| Saccharum spontaneum | Chr4D | 3 | CH_ssp_574 | 3 | 6 | 0.0000499183 |
| Saccharum spontaneum | Chr4C | 3 | CH_ssp_68 | 5 | 6 | 0.00000000000117702 |
| Setaria viridis | Chr_01 | 3 | CH_svi_42 | 5 | 5 | 0.0000000000000140118 |
| Triticum aestivum | Chr1B | 3 | CH_tae_235 | 5 | 5 | 0.00000000000215755 |
| Triticum aestivum | Chr2A | 3 | CH_tae_399 | 4 | 4 | 0.00000000490779 |
| Triticum aestivum | Chr2D | 3 | CH_tae_400 | 4 | 4 | 0.00000000490779 |
| Triticum aestivum | Chr1D | 3 | CH_tae_860 | 3 | 3 | 0.0000109313 |
| Triticum aestivum | Chr6B | 3 | CH_tae_861 | 3 | 3 | 0.0000109313 |
| Triticum aestivum | Chr6A | 3 | CH_tae_862 | 3 | 4 | 0.0000109313 |
| Triticum aestivum | Chr6D | 3 | CH_tae_982 | 3 | 4 | 0.00004371 |
| Triticum dicoccoides | 2B | 3 | CH_tdi_134 | 4 | 4 | 0.00000000215072 |
| Triticum dicoccoides | 1B | 3 | CH_tdi_135 | 4 | 4 | 0.00000000215072 |
| Triticum dicoccoides | 2A | 3 | CH_tdi_291 | 3 | 3 | 0.0000053666 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00007.1 | 3 | CH_zjn_58 | 3 | 4 | 0.000000690277 |
| Allium sativum | chr8 | 4 | CH_asa_104 | 4 | 8 | 0.0000000000611073 |
| Aegilops tauschii | 2D | 4 | CH_ata_82 | 4 | 5 | 0.00000000325897 |
| Brachypodium distachyon | Bd3 | 4 | CH_bdi_50 | 4 | 4 | 0.000000000246231 |
| Cenchrus purpureus | GWHAORA00000013 | 4 | CH_cpu_107 | 5 | 6 | 0.000000000000352098 |
| Cenchrus purpureus | GWHAORA00000005 | 4 | CH_cpu_182 | 4 | 4 | 0.000000000271219 |
| Digitaria exilis | Dexi_CM05836_chr01A | 4 | CH_dex_160 | 4 | 8 | 0.00000000258578 |
| Digitaria exilis | Dexi_CM05836_chr01B | 4 | CH_dex_251 | 3 | 3 | 0.00000027644 |
| Eragrostis curvula | 1 | 4 | CH_ecu_194 | 4 | 5 | 0.000000000110158 |
| Eragrostis curvula | Contig30 | 4 | CH_ecu_225 | 4 | 7 | 0.000000000770955 |
| Hordeum vulgare | chr2H | 4 | CH_hvu_131 | 4 | 8 | 0.0000000191463 |
| Hordeum vulgare | chr6H | 4 | CH_hvu_248 | 3 | 5 | 0.0000112366 |
| Lolium perenne | Lp_chr3_0 | 4 | CH_lpe_36 | 5 | 6 | 0.000000000000144232 |
| Lolium perenne | Lp_chr2_0 | 4 | CH_lpe_83 | 4 | 6 | 0.00000000203923 |
| Marchantia polymorpha | scaffold_70 | 4 | CH_mpo_23 | 5 | 11 | 0.000000000237776 |
| Oryza alta | GWHAZTO00000014 | 4 | CH_oal_107 | 4 | 7 | 0.000000000425228 |
| Oryza brachyantha | 2 | 4 | CH_obr_32 | 4 | 5 | 0.000000000111895 |
| Oryza sativa ssp. indica | Chr2 | 4 | CH_osaindica_145 | 3 | 4 | 0.000000560415 |
| Oryza sativa Kitaake | Chr2 | 4 | CH_osak_94 | 4 | 4 | 0.00000000011235 |
| Oryza sativa ssp. japonica | chr02 | 4 | CH_osa_84 | 4 | 6 | 0.000000000835039 |
| Oropetium thomaeum | Chromosome_1 | 4 | CH_oth_26 | 4 | 6 | 0.000000000568039 |
| Phyllostachys edulis | hic_scaffold_3 | 4 | CH_ped_187 | 3 | 4 | 0.000000836668 |
| Panicum hallii | Chr01 | 4 | CH_pha_33 | 5 | 6 | 0.0000000000000287382 |
| Populus trichocarpa | Chr10 | 4 | CH_ptr_457 | 2 | 2 | 0.000578001 |
| Sorghum bicolor | Chr04 | 4 | CH_sbi_34 | 5 | 5 | 0.00000000000000497666 |
| Secale cereale | GWHASIY00000001 | 4 | CH_sce_22 | 7 | 7 | 3.37291e-19 |
| Secale cereale | GWHASIY00000002 | 4 | CH_sce_363 | 3 | 3 | 0.00000715165 |
| Setaria italica | scaffold_1 | 4 | CH_sit_45 | 5 | 5 | 0.0000000000000214559 |
| Saccharum spontaneum | Chr4A | 4 | CH_ssp_14 | 7 | 8 | 1.03195e-19 |
| Saccharum spontaneum | Chr4B | 4 | CH_ssp_367 | 3 | 3 | 0.00000249761 |
| Saccharum spontaneum | Chr4D | 4 | CH_ssp_574 | 3 | 6 | 0.0000499183 |
| Saccharum spontaneum | Chr4C | 4 | CH_ssp_68 | 5 | 6 | 0.00000000000117702 |
| Setaria viridis | Chr_01 | 4 | CH_svi_42 | 5 | 5 | 0.0000000000000140118 |
| Triticum aestivum | Chr1B | 4 | CH_tae_235 | 5 | 5 | 0.00000000000215755 |
| Triticum aestivum | Chr2A | 4 | CH_tae_399 | 4 | 4 | 0.00000000490779 |
| Triticum aestivum | Chr2D | 4 | CH_tae_400 | 4 | 4 | 0.00000000490779 |
| Triticum aestivum | Chr1D | 4 | CH_tae_860 | 3 | 3 | 0.0000109313 |
| Triticum aestivum | Chr6B | 4 | CH_tae_861 | 3 | 3 | 0.0000109313 |
| Triticum aestivum | Chr6A | 4 | CH_tae_862 | 3 | 4 | 0.0000109313 |
| Triticum aestivum | Chr6D | 4 | CH_tae_982 | 3 | 4 | 0.00004371 |
| Triticum dicoccoides | 2B | 4 | CH_tdi_134 | 4 | 4 | 0.00000000215072 |
| Triticum dicoccoides | 1B | 4 | CH_tdi_135 | 4 | 4 | 0.00000000215072 |
| Triticum dicoccoides | 2A | 4 | CH_tdi_291 | 3 | 3 | 0.0000053666 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00007.1 | 4 | CH_zjn_58 | 3 | 4 | 0.000000690277 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |