Functional clusters
Information
- Type Gene Ontology
- Description pectate lyase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 3 | CH_aag_52 | 4 | 10 | 0.000000160942 |
| Asparagus officinalis | AsparagusV1_01 | 3 | CH_aof_121 | 3 | 8 | 0.000325692 |
| Cenchrus purpureus | GWHAORA00000003 | 3 | CH_cpu_491 | 3 | 3 | 0.00000782127 |
| Eragrostis curvula | 7 | 3 | CH_ecu_486 | 3 | 4 | 0.00000613223 |
| Eragrostis curvula | 3 | 3 | CH_ecu_781 | 3 | 13 | 0.000437576 |
| Glycine max | Gm18 | 3 | CH_gma_289 | 3 | 3 | 0.0000154295 |
| Magnolia biondii | Chr14 | 3 | CH_mbi_194 | 4 | 8 | 0.0000000735287 |
| Oryza alta | GWHAZTO00000006 | 3 | CH_oal_269 | 3 | 3 | 0.000000810131 |
| Oryza sativa ssp. indica | Chr6 | 3 | CH_osaindica_206 | 3 | 6 | 0.000013204 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_1082 | 3 | 3 | 0.000141365 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_15 | 16 | 16 | 4.84384e-42 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_4 | 22 | 22 | 7.84048e-60 |
| Sequoiadendron giganteum | chr7 | 3 | CH_sgi_731 | 4 | 5 | 0.00000103183 |
| Vanilla planifolia | CM028153.1 | 3 | CH_vpl_66 | 6 | 53 | 0.000000030231 |
| Zostera marina | Chr04 | 3 | CH_zosmarina_80 | 3 | 4 | 0.0000254418 |
| Anthoceros agrestis | Sc2ySwM_228 | 4 | CH_aag_52 | 4 | 10 | 0.000000160942 |
| Asparagus officinalis | AsparagusV1_01 | 4 | CH_aof_121 | 3 | 8 | 0.000325692 |
| Cenchrus purpureus | GWHAORA00000003 | 4 | CH_cpu_491 | 3 | 3 | 0.00000782127 |
| Eragrostis curvula | 7 | 4 | CH_ecu_486 | 3 | 4 | 0.00000613223 |
| Eragrostis curvula | 3 | 4 | CH_ecu_781 | 3 | 13 | 0.000437576 |
| Glycine max | Gm18 | 4 | CH_gma_289 | 3 | 3 | 0.0000154295 |
| Magnolia biondii | Chr14 | 4 | CH_mbi_194 | 4 | 8 | 0.0000000735287 |
| Oryza alta | GWHAZTO00000006 | 4 | CH_oal_269 | 3 | 3 | 0.000000810131 |
| Oryza sativa ssp. indica | Chr6 | 4 | CH_osaindica_206 | 3 | 6 | 0.000013204 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_1082 | 3 | 3 | 0.000141365 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_15 | 16 | 16 | 4.84384e-42 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_4 | 22 | 22 | 7.84048e-60 |
| Sequoiadendron giganteum | chr7 | 4 | CH_sgi_731 | 4 | 5 | 0.00000103183 |
| Vanilla planifolia | CM028153.1 | 4 | CH_vpl_66 | 6 | 53 | 0.000000030231 |
| Zostera marina | Chr04 | 4 | CH_zosmarina_80 | 3 | 4 | 0.0000254418 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |