Functional clusters

Information

  • Type Gene Ontology
  • Description cellular amide metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr7 3 CH_acertr_120 10 19 0.0000000360787
Citrus clementina scaffold_1 3 CH_ccl_160 11 27 0.0000000786126
Solanum tuberosum ST4.03ch06 3 CH_stu_491 13 76 0.000183021
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_202 7 13 0.0000863588
Vitis vinifera chr1 3 CH_vvi_367 7 17 0.000428153
Acer truncatum chr7 4 CH_acertr_120 10 19 0.0000000360787
Citrus clementina scaffold_1 4 CH_ccl_160 11 27 0.0000000786126
Solanum tuberosum ST4.03ch06 4 CH_stu_491 13 76 0.000183021
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_202 7 13 0.0000863588
Vitis vinifera chr1 4 CH_vvi_367 7 17 0.000428153

Available child term results

Ontology identifier Description Number of clusters
GO:0000256 allantoin catabolic process 2
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0001731 formation of translation preinitiation complex 14
GO:0002182 cytoplasmic translational elongation 20
GO:0006085 acetyl-CoA biosynthetic process 2
GO:0006104 succinyl-CoA metabolic process 6
GO:0006412 translation 8
GO:0006413 translational initiation 8
GO:0006414 translational elongation 2
GO:0006415 translational termination 12
GO:0006417 regulation of translation 8
GO:0006418 tRNA aminoacylation for protein translation 14
GO:0006419 alanyl-tRNA aminoacylation 26
GO:0006420 arginyl-tRNA aminoacylation 24
GO:0006421 asparaginyl-tRNA aminoacylation 2
GO:0006422 aspartyl-tRNA aminoacylation 22
GO:0006423 cysteinyl-tRNA aminoacylation 2
GO:0006424 glutamyl-tRNA aminoacylation 8
GO:0006425 glutaminyl-tRNA aminoacylation 2
GO:0006426 glycyl-tRNA aminoacylation 24
GO:0006427 histidyl-tRNA aminoacylation 2
GO:0006428 isoleucyl-tRNA aminoacylation 6
GO:0006429 leucyl-tRNA aminoacylation 44
GO:0006430 lysyl-tRNA aminoacylation 16
GO:0006431 methionyl-tRNA aminoacylation 12
GO:0006432 phenylalanyl-tRNA aminoacylation 16
GO:0006433 prolyl-tRNA aminoacylation 28
GO:0006434 seryl-tRNA aminoacylation 24
GO:0006435 threonyl-tRNA aminoacylation 32
GO:0006436 tryptophanyl-tRNA aminoacylation 10
GO:0006437 tyrosyl-tRNA aminoacylation 4
GO:0006438 valyl-tRNA aminoacylation 54
GO:0006465 signal peptide processing 14
GO:0006518 peptide metabolic process 14
GO:0006679 glucosylceramide biosynthetic process 2
GO:0006680 glucosylceramide catabolic process 10
GO:0006749 glutathione metabolic process 210
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine 18
GO:0019427 acetyl-CoA biosynthetic process from acetate 2
GO:0030187 melatonin biosynthetic process 4
GO:0032055 negative regulation of translation in response to stress 2
GO:0032543 mitochondrial translation 8
GO:0033355 ascorbate glutathione cycle 22
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine 2
GO:0034248 regulation of cellular amide metabolic process 2
GO:0035278 miRNA mediated inhibition of translation 56
GO:0035336 long-chain fatty-acyl-CoA metabolic process 6
GO:0043043 peptide biosynthetic process 2
GO:0043419 urea catabolic process 4
GO:0045727 positive regulation of translation 18
GO:0045901 positive regulation of translational elongation 18
GO:0045905 positive regulation of translational termination 2
GO:0046514 ceramide catabolic process 6
GO:0046656 folic acid biosynthetic process 2
GO:0046938 phytochelatin biosynthetic process 52
GO:0046949 fatty-acyl-CoA biosynthetic process 4
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0070158 mitochondrial seryl-tRNA aminoacylation 2
GO:0072344 rescue of stalled ribosome 12
GO:0080149 sucrose induced translational repression 2
GO:0097167 circadian regulation of translation 4
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1900706 positive regulation of siderophore biosynthetic process 96
GO:1902190 2-methylbutanoyl-CoA(4-) catabolic process 6
GO:2001294 malonyl-CoA catabolic process 18

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001