Functional clusters

Information

  • Type Gene Ontology
  • Description oxidoreductase activity, acting on CH-OH group of donors

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-3 3 CH_aar_183 4 5 0.000229565
Acer truncatum chr11 3 CH_acertr_159 5 5 0.000000334541
Arabidopsis lyrata scaffold_8 3 CH_aly_296 4 6 0.000506794
Brassica carinata ChrC04 3 CH_bca_903 4 6 0.000636137
Brassica napus C09 3 CH_bna_416 5 9 0.000042999
Brassica oleracea C9 3 CH_bol_232 5 9 0.0000229577
Camellia sinensis var. sinensis Chr15 3 CH_camsi_762 5 11 0.000459834
Cannabis sativa NC_044377.1 3 CH_cansat_25 14 40 7.38538e-17
Cardamine hirsuta Chr8 3 CH_chi_348 4 6 0.000460325
Capsella rubella scaffold_8 3 CH_cru_314 4 6 0.00055781
Davidia involucrata GWHABJS00000009 3 CH_din_8 14 14 1.67937e-26
Eutrema salsugineum scaffold_2 3 CH_esa_99 5 6 0.0000018339
Helianthus annuus HanXRQChr13 3 CH_han_609 8 60 0.00028632
Malus domestica Chr03 3 CH_mdo_146 7 11 0.00000000653137
Prunus persica Pp01 3 CH_ppe_19 14 17 1.08407e-22
Pisum sativum chr2LG1 3 CH_psa_333 4 6 0.000377812
Rosa chinensis RcHm_v2.0_Chr4 3 CH_rch_382 5 6 0.00000301617
Salvia bowleyana GWHASIU00000008 3 CH_sbo_123 7 12 0.00000000152863
Sechium edule LG03 3 CH_sed_219 4 5 0.000273114
Sechium edule LG11 3 CH_sed_68 6 7 0.000000016381
Sequoiadendron giganteum chr4 3 CH_sgi_1036 5 7 0.0000792397
Schrenkiella parvula ch6-6 3 CH_spa_144 4 5 0.000206475
Trochodendron aralioides group1 3 CH_tar_293 4 4 0.0000750426
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_150 5 5 0.00000229481
Aethionema arabicum LG-3 4 CH_aar_183 4 5 0.000229565
Acer truncatum chr11 4 CH_acertr_159 5 5 0.000000334541
Arabidopsis lyrata scaffold_8 4 CH_aly_296 4 6 0.000506794
Brassica carinata ChrC04 4 CH_bca_903 4 6 0.000636137
Brassica napus C09 4 CH_bna_416 5 9 0.000042999
Brassica oleracea C9 4 CH_bol_232 5 9 0.0000229577
Camellia sinensis var. sinensis Chr15 4 CH_camsi_762 5 11 0.000459834
Cannabis sativa NC_044377.1 4 CH_cansat_25 14 40 7.38538e-17
Cardamine hirsuta Chr8 4 CH_chi_348 4 6 0.000460325
Capsella rubella scaffold_8 4 CH_cru_314 4 6 0.00055781
Davidia involucrata GWHABJS00000009 4 CH_din_8 14 14 1.67937e-26
Eutrema salsugineum scaffold_2 4 CH_esa_99 5 6 0.0000018339
Helianthus annuus HanXRQChr13 4 CH_han_609 8 60 0.00028632
Malus domestica Chr03 4 CH_mdo_146 7 11 0.00000000653137
Prunus persica Pp01 4 CH_ppe_19 14 17 1.08407e-22
Pisum sativum chr2LG1 4 CH_psa_333 4 6 0.000377812
Rosa chinensis RcHm_v2.0_Chr4 4 CH_rch_382 5 6 0.00000301617
Salvia bowleyana GWHASIU00000008 4 CH_sbo_123 7 12 0.00000000152863
Sechium edule LG03 4 CH_sed_219 4 5 0.000273114
Sechium edule LG11 4 CH_sed_68 6 7 0.000000016381
Sequoiadendron giganteum chr4 4 CH_sgi_1036 5 7 0.0000792397
Schrenkiella parvula ch6-6 4 CH_spa_144 4 5 0.000206475
Trochodendron aralioides group1 4 CH_tar_293 4 4 0.0000750426
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_150 5 5 0.00000229481

Available child term results

Ontology identifier Description Number of clusters
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity 8
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity 2
GO:0003858 3-hydroxybutyrate dehydrogenase activity 2
GO:0003862 3-isopropylmalate dehydrogenase activity 38
GO:0003885 D-arabinono-1,4-lactone oxidase activity 16
GO:0003938 IMP dehydrogenase activity 14
GO:0003939 L-iditol 2-dehydrogenase activity 6
GO:0003979 UDP-glucose 6-dehydrogenase activity 24
GO:0004022 alcohol dehydrogenase (NAD+) activity 38
GO:0004024 alcohol dehydrogenase activity, zinc-dependent 6
GO:0004032 alditol:NADP+ 1-oxidoreductase activity 8
GO:0004033 aldo-keto reductase (NADP) activity 2
GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity 4
GO:0004345 glucose-6-phosphate dehydrogenase activity 8
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity 8
GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity 20
GO:0004399 histidinol dehydrogenase activity 4
GO:0004412 homoserine dehydrogenase activity 32
GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity 36
GO:0004449 isocitrate dehydrogenase (NAD+) activity 4
GO:0004450 isocitrate dehydrogenase (NADP+) activity 12
GO:0004455 ketol-acid reductoisomerase activity 12
GO:0004458 D-lactate dehydrogenase (cytochrome) activity 20
GO:0004459 L-lactate dehydrogenase activity 22
GO:0004470 malic enzyme activity 6
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity 4
GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity 2
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity 26
GO:0004764 shikimate 3-dehydrogenase (NADP+) activity 62
GO:0008106 alcohol dehydrogenase (NADP+) activity 38
GO:0008114 phosphogluconate 2-dehydrogenase activity 2
GO:0008442 3-hydroxyisobutyrate dehydrogenase activity 4
GO:0008677 2-dehydropantoate 2-reductase activity 14
GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity 4
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity 4
GO:0008891 glycolate oxidase activity 36
GO:0010301 xanthoxin dehydrogenase activity 12
GO:0016615 malate dehydrogenase activity 2
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 22
GO:0016618 hydroxypyruvate reductase activity 84
GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor 6
GO:0018454 acetoacetyl-CoA reductase activity 52
GO:0030060 L-malate dehydrogenase activity 2
GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity 18
GO:0033707 3''-deamino-3''-oxonicotianamine reductase activity 20
GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 2
GO:0034256 chlorophyll(ide) b reductase activity 4
GO:0045480 galactose oxidase activity 22
GO:0045551 cinnamyl-alcohol dehydrogenase activity 30
GO:0045552 dihydrokaempferol 4-reductase activity 4
GO:0046029 mannitol dehydrogenase activity 34
GO:0046554 malate dehydrogenase (NADP+) activity 2
GO:0046577 long-chain-alcohol oxidase activity 34
GO:0047012 sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity 12
GO:0047501 (+)-neomenthol dehydrogenase activity 30
GO:0047545 2-hydroxyglutarate dehydrogenase activity 6
GO:0047560 3-dehydrosphinganine reductase activity 12
GO:0047641 aldose-6-phosphate reductase (NADPH) activity 8
GO:0047834 D-threo-aldose 1-dehydrogenase activity 454
GO:0047886 farnesol dehydrogenase activity 12
GO:0047995 hydroxyphenylpyruvate reductase activity 28
GO:0050105 L-gulonolactone oxidase activity 64
GO:0050236 pyridoxine:NADP 4-dehydrogenase activity 2
GO:0050268 coniferyl-alcohol dehydrogenase activity 8
GO:0050577 GDP-L-fucose synthase activity 4
GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase activity 4
GO:0051990 (R)-2-hydroxyglutarate dehydrogenase activity 6
GO:0052747 sinapyl alcohol dehydrogenase activity 4
GO:0052852 very-long-chain-(S)-2-hydroxy-acid oxidase activity 8
GO:0070524 11-beta-hydroxysteroid dehydrogenase (NADP+) activity 58
GO:0102311 8-hydroxygeraniol dehydrogenase activity 28

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001