Functional clusters

Information

  • Type Gene Ontology
  • Description oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica napus C03 3 CH_bna_627 7 58 0.000561351
Chenopodium quinoa C_Quinoa_Scaffold_2608 3 CH_cqu_339 4 4 0.000064105
Davidia involucrata GWHABJS00000020 3 CH_din_229 4 4 0.0000441409
Oryza sativa ssp. japonica chr09 3 CH_osa_189 5 6 0.00000156549
Oryza sativa ssp. japonica chr04 3 CH_osa_261 5 9 0.0000323997
Oryza sativa ssp. japonica chr07 3 CH_osa_449 4 6 0.000670608
Papaver somniferum NC_039362.1 3 CH_pso_358 8 64 0.00000635877
Quercus lobata 5 3 CH_qlo_758 5 10 0.0000749606
Vitis vinifera chr5 3 CH_vvi_252 4 4 0.0000464879
Zea mays 9 3 CH_zma_125 6 10 0.000000839586
Zea mays 7 3 CH_zma_147 5 6 0.00000359002
Brassica napus C03 4 CH_bna_627 7 58 0.000561351
Chenopodium quinoa C_Quinoa_Scaffold_2608 4 CH_cqu_339 4 4 0.000064105
Davidia involucrata GWHABJS00000020 4 CH_din_229 4 4 0.0000441409
Oryza sativa ssp. japonica chr09 4 CH_osa_189 5 6 0.00000156549
Oryza sativa ssp. japonica chr04 4 CH_osa_261 5 9 0.0000323997
Oryza sativa ssp. japonica chr07 4 CH_osa_449 4 6 0.000670608
Papaver somniferum NC_039362.1 4 CH_pso_358 8 64 0.00000635877
Quercus lobata 5 4 CH_qlo_758 5 10 0.0000749606
Vitis vinifera chr5 4 CH_vvi_252 4 4 0.0000464879
Zea mays 9 4 CH_zma_125 6 10 0.000000839586
Zea mays 7 4 CH_zma_147 5 6 0.00000359002

Available child term results

Ontology identifier Description Number of clusters
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity 8
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity 2
GO:0003858 3-hydroxybutyrate dehydrogenase activity 2
GO:0003862 3-isopropylmalate dehydrogenase activity 38
GO:0003938 IMP dehydrogenase activity 14
GO:0003939 L-iditol 2-dehydrogenase activity 6
GO:0003979 UDP-glucose 6-dehydrogenase activity 24
GO:0004022 alcohol dehydrogenase (NAD+) activity 38
GO:0004024 alcohol dehydrogenase activity, zinc-dependent 6
GO:0004032 alditol:NADP+ 1-oxidoreductase activity 8
GO:0004033 aldo-keto reductase (NADP) activity 2
GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity 4
GO:0004345 glucose-6-phosphate dehydrogenase activity 8
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity 8
GO:0004399 histidinol dehydrogenase activity 4
GO:0004412 homoserine dehydrogenase activity 32
GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity 36
GO:0004449 isocitrate dehydrogenase (NAD+) activity 4
GO:0004450 isocitrate dehydrogenase (NADP+) activity 12
GO:0004455 ketol-acid reductoisomerase activity 12
GO:0004459 L-lactate dehydrogenase activity 22
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity 4
GO:0004473 malate dehydrogenase (decarboxylating) (NADP+) activity 2
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity 26
GO:0004764 shikimate 3-dehydrogenase (NADP+) activity 62
GO:0008106 alcohol dehydrogenase (NADP+) activity 38
GO:0008114 phosphogluconate 2-dehydrogenase activity 2
GO:0008442 3-hydroxyisobutyrate dehydrogenase activity 4
GO:0008677 2-dehydropantoate 2-reductase activity 14
GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity 4
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity 4
GO:0010301 xanthoxin dehydrogenase activity 12
GO:0016618 hydroxypyruvate reductase activity 84
GO:0018454 acetoacetyl-CoA reductase activity 52
GO:0030060 L-malate dehydrogenase activity 2
GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity 18
GO:0033707 3''-deamino-3''-oxonicotianamine reductase activity 20
GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 2
GO:0034256 chlorophyll(ide) b reductase activity 4
GO:0045551 cinnamyl-alcohol dehydrogenase activity 30
GO:0045552 dihydrokaempferol 4-reductase activity 4
GO:0046029 mannitol dehydrogenase activity 34
GO:0046554 malate dehydrogenase (NADP+) activity 2
GO:0047012 sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity 12
GO:0047501 (+)-neomenthol dehydrogenase activity 30
GO:0047560 3-dehydrosphinganine reductase activity 12
GO:0047641 aldose-6-phosphate reductase (NADPH) activity 8
GO:0047834 D-threo-aldose 1-dehydrogenase activity 454
GO:0047886 farnesol dehydrogenase activity 12
GO:0047995 hydroxyphenylpyruvate reductase activity 28
GO:0050236 pyridoxine:NADP 4-dehydrogenase activity 2
GO:0050268 coniferyl-alcohol dehydrogenase activity 8
GO:0050577 GDP-L-fucose synthase activity 4
GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase activity 4
GO:0052747 sinapyl alcohol dehydrogenase activity 4
GO:0070524 11-beta-hydroxysteroid dehydrogenase (NADP+) activity 58
GO:0102311 8-hydroxygeraniol dehydrogenase activity 28

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001