Functional clusters
Information
- Type Gene Ontology
- Description shikimate 3-dehydrogenase (NADP+) activity
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Aethionema arabicum | LG-5 | 3 | CH_aar_160 | 2 | 2 | 0.0000912326 |
Acer truncatum | chr2 | 3 | CH_acertr_15 | 6 | 6 | 1.09735e-18 |
Actinidia chinensis | Lachesis_group19 | 3 | CH_ach_258 | 2 | 2 | 0.000814819 |
Aquilegia oxysepala | CHR05 | 3 | CH_aox_267 | 2 | 2 | 0.000481193 |
Amborella trichopoda | AmTr_v1.0_scaffold00057 | 3 | CH_atr_75 | 3 | 3 | 0.00000000946662 |
Brassica carinata | ChrC09 | 3 | CH_bca_912 | 2 | 3 | 0.000641272 |
Camellia sinensis var. sinensis | Chr3 | 3 | CH_camsi_202 | 4 | 23 | 0.0000000127974 |
Corylus avellana | 2 | 3 | CH_cav_105 | 3 | 3 | 0.0000000881765 |
Ceratophyllum demersum | 11 | 3 | CH_cde_166 | 2 | 4 | 0.00047384 |
Carya illinoinensis | Chr07 | 3 | CH_cil_195 | 3 | 3 | 0.00000011526 |
Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 3 | CH_cqu_525 | 2 | 2 | 0.000710732 |
Capsella rubella | scaffold_3 | 3 | CH_cru_217 | 2 | 2 | 0.0000731154 |
Davidia involucrata | GWHABJS00000005 | 3 | CH_din_141 | 3 | 3 | 0.000000619075 |
Fragaria vesca | Fvb6 | 3 | CH_fve_134 | 4 | 25 | 0.000000116202 |
Manihot esculenta | Chromosome09 | 3 | CH_mes_159 | 3 | 3 | 0.0000000559323 |
Nelumbo nucifera | chr4 | 3 | CH_nnu_91 | 3 | 5 | 0.000000139203 |
Punica granatum | NC_045127.1 | 3 | CH_pgr_378 | 2 | 2 | 0.000750356 |
Punica granatum | NC_045133.1 | 3 | CH_pgr_379 | 2 | 2 | 0.000750356 |
Prunus persica | Pp06 | 3 | CH_ppe_384 | 2 | 3 | 0.000223789 |
Pisum sativum | chr7LG7 | 3 | CH_psa_276 | 2 | 2 | 0.00015649 |
Papaver somniferum | NC_039358.1 | 3 | CH_pso_195 | 3 | 3 | 0.00000000761368 |
Populus trichocarpa | Chr13 | 3 | CH_ptr_448 | 2 | 2 | 0.000867002 |
Salvia bowleyana | GWHASIU00000006 | 3 | CH_sbo_416 | 2 | 2 | 0.000272988 |
Salix brachista | GWHAAZH00000013 | 3 | CH_sbr_358 | 2 | 2 | 0.00063014 |
Simmondsia chinensis | GWHAASQ00000019 | 3 | CH_sci_215 | 2 | 2 | 0.000255428 |
Sequoiadendron giganteum | chr10 | 3 | CH_sgi_1278 | 2 | 2 | 0.000487151 |
Sequoiadendron giganteum | chr4 | 3 | CH_sgi_547 | 3 | 3 | 0.0000000355983 |
Trochodendron aralioides | group17 | 3 | CH_tar_447 | 2 | 2 | 0.000600366 |
Theobroma cacao | Chromosome_5 | 3 | CH_tca_167 | 3 | 5 | 0.000000321804 |
Utricularia gibba | unitig_37 | 3 | CH_ugi_72 | 2 | 2 | 0.0000820479 |
Vitis vinifera | chr14 | 3 | CH_vvi_135 | 3 | 3 | 0.0000000347148 |
Aethionema arabicum | LG-5 | 4 | CH_aar_160 | 2 | 2 | 0.0000912326 |
Acer truncatum | chr2 | 4 | CH_acertr_15 | 6 | 6 | 1.09735e-18 |
Actinidia chinensis | Lachesis_group19 | 4 | CH_ach_258 | 2 | 2 | 0.000814819 |
Aquilegia oxysepala | CHR05 | 4 | CH_aox_267 | 2 | 2 | 0.000481193 |
Amborella trichopoda | AmTr_v1.0_scaffold00057 | 4 | CH_atr_75 | 3 | 3 | 0.00000000946662 |
Brassica carinata | ChrC09 | 4 | CH_bca_912 | 2 | 3 | 0.000641272 |
Camellia sinensis var. sinensis | Chr3 | 4 | CH_camsi_202 | 4 | 23 | 0.0000000127974 |
Corylus avellana | 2 | 4 | CH_cav_105 | 3 | 3 | 0.0000000881765 |
Ceratophyllum demersum | 11 | 4 | CH_cde_166 | 2 | 4 | 0.00047384 |
Carya illinoinensis | Chr07 | 4 | CH_cil_195 | 3 | 3 | 0.00000011526 |
Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 4 | CH_cqu_525 | 2 | 2 | 0.000710732 |
Capsella rubella | scaffold_3 | 4 | CH_cru_217 | 2 | 2 | 0.0000731154 |
Davidia involucrata | GWHABJS00000005 | 4 | CH_din_141 | 3 | 3 | 0.000000619075 |
Fragaria vesca | Fvb6 | 4 | CH_fve_134 | 4 | 25 | 0.000000116202 |
Manihot esculenta | Chromosome09 | 4 | CH_mes_159 | 3 | 3 | 0.0000000559323 |
Nelumbo nucifera | chr4 | 4 | CH_nnu_91 | 3 | 5 | 0.000000139203 |
Punica granatum | NC_045127.1 | 4 | CH_pgr_378 | 2 | 2 | 0.000750356 |
Punica granatum | NC_045133.1 | 4 | CH_pgr_379 | 2 | 2 | 0.000750356 |
Prunus persica | Pp06 | 4 | CH_ppe_384 | 2 | 3 | 0.000223789 |
Pisum sativum | chr7LG7 | 4 | CH_psa_276 | 2 | 2 | 0.00015649 |
Papaver somniferum | NC_039358.1 | 4 | CH_pso_195 | 3 | 3 | 0.00000000761368 |
Populus trichocarpa | Chr13 | 4 | CH_ptr_448 | 2 | 2 | 0.000867002 |
Salvia bowleyana | GWHASIU00000006 | 4 | CH_sbo_416 | 2 | 2 | 0.000272988 |
Salix brachista | GWHAAZH00000013 | 4 | CH_sbr_358 | 2 | 2 | 0.00063014 |
Simmondsia chinensis | GWHAASQ00000019 | 4 | CH_sci_215 | 2 | 2 | 0.000255428 |
Sequoiadendron giganteum | chr10 | 4 | CH_sgi_1278 | 2 | 2 | 0.000487151 |
Sequoiadendron giganteum | chr4 | 4 | CH_sgi_547 | 3 | 3 | 0.0000000355983 |
Trochodendron aralioides | group17 | 4 | CH_tar_447 | 2 | 2 | 0.000600366 |
Theobroma cacao | Chromosome_5 | 4 | CH_tca_167 | 3 | 5 | 0.000000321804 |
Utricularia gibba | unitig_37 | 4 | CH_ugi_72 | 2 | 2 | 0.0000820479 |
Vitis vinifera | chr14 | 4 | CH_vvi_135 | 3 | 3 | 0.0000000347148 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |