Functional clusters

Information

  • Type Gene Ontology
  • Description shikimate 3-dehydrogenase (NADP+) activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-5 3 CH_aar_160 2 2 0.0000912326
Acer truncatum chr2 3 CH_acertr_15 6 6 1.09735e-18
Actinidia chinensis Lachesis_group19 3 CH_ach_258 2 2 0.000814819
Aquilegia oxysepala CHR05 3 CH_aox_267 2 2 0.000481193
Amborella trichopoda AmTr_v1.0_scaffold00057 3 CH_atr_75 3 3 0.00000000946662
Brassica carinata ChrC09 3 CH_bca_912 2 3 0.000641272
Camellia sinensis var. sinensis Chr3 3 CH_camsi_202 4 23 0.0000000127974
Corylus avellana 2 3 CH_cav_105 3 3 0.0000000881765
Ceratophyllum demersum 11 3 CH_cde_166 2 4 0.00047384
Carya illinoinensis Chr07 3 CH_cil_195 3 3 0.00000011526
Chenopodium quinoa C_Quinoa_Scaffold_2088 3 CH_cqu_525 2 2 0.000710732
Capsella rubella scaffold_3 3 CH_cru_217 2 2 0.0000731154
Davidia involucrata GWHABJS00000005 3 CH_din_141 3 3 0.000000619075
Fragaria vesca Fvb6 3 CH_fve_134 4 25 0.000000116202
Manihot esculenta Chromosome09 3 CH_mes_159 3 3 0.0000000559323
Nelumbo nucifera chr4 3 CH_nnu_91 3 5 0.000000139203
Punica granatum NC_045127.1 3 CH_pgr_378 2 2 0.000750356
Punica granatum NC_045133.1 3 CH_pgr_379 2 2 0.000750356
Prunus persica Pp06 3 CH_ppe_384 2 3 0.000223789
Pisum sativum chr7LG7 3 CH_psa_276 2 2 0.00015649
Papaver somniferum NC_039358.1 3 CH_pso_195 3 3 0.00000000761368
Populus trichocarpa Chr13 3 CH_ptr_448 2 2 0.000867002
Salvia bowleyana GWHASIU00000006 3 CH_sbo_416 2 2 0.000272988
Salix brachista GWHAAZH00000013 3 CH_sbr_358 2 2 0.00063014
Simmondsia chinensis GWHAASQ00000019 3 CH_sci_215 2 2 0.000255428
Sequoiadendron giganteum chr10 3 CH_sgi_1278 2 2 0.000487151
Sequoiadendron giganteum chr4 3 CH_sgi_547 3 3 0.0000000355983
Trochodendron aralioides group17 3 CH_tar_447 2 2 0.000600366
Theobroma cacao Chromosome_5 3 CH_tca_167 3 5 0.000000321804
Utricularia gibba unitig_37 3 CH_ugi_72 2 2 0.0000820479
Vitis vinifera chr14 3 CH_vvi_135 3 3 0.0000000347148
Aethionema arabicum LG-5 4 CH_aar_160 2 2 0.0000912326
Acer truncatum chr2 4 CH_acertr_15 6 6 1.09735e-18
Actinidia chinensis Lachesis_group19 4 CH_ach_258 2 2 0.000814819
Aquilegia oxysepala CHR05 4 CH_aox_267 2 2 0.000481193
Amborella trichopoda AmTr_v1.0_scaffold00057 4 CH_atr_75 3 3 0.00000000946662
Brassica carinata ChrC09 4 CH_bca_912 2 3 0.000641272
Camellia sinensis var. sinensis Chr3 4 CH_camsi_202 4 23 0.0000000127974
Corylus avellana 2 4 CH_cav_105 3 3 0.0000000881765
Ceratophyllum demersum 11 4 CH_cde_166 2 4 0.00047384
Carya illinoinensis Chr07 4 CH_cil_195 3 3 0.00000011526
Chenopodium quinoa C_Quinoa_Scaffold_2088 4 CH_cqu_525 2 2 0.000710732
Capsella rubella scaffold_3 4 CH_cru_217 2 2 0.0000731154
Davidia involucrata GWHABJS00000005 4 CH_din_141 3 3 0.000000619075
Fragaria vesca Fvb6 4 CH_fve_134 4 25 0.000000116202
Manihot esculenta Chromosome09 4 CH_mes_159 3 3 0.0000000559323
Nelumbo nucifera chr4 4 CH_nnu_91 3 5 0.000000139203
Punica granatum NC_045127.1 4 CH_pgr_378 2 2 0.000750356
Punica granatum NC_045133.1 4 CH_pgr_379 2 2 0.000750356
Prunus persica Pp06 4 CH_ppe_384 2 3 0.000223789
Pisum sativum chr7LG7 4 CH_psa_276 2 2 0.00015649
Papaver somniferum NC_039358.1 4 CH_pso_195 3 3 0.00000000761368
Populus trichocarpa Chr13 4 CH_ptr_448 2 2 0.000867002
Salvia bowleyana GWHASIU00000006 4 CH_sbo_416 2 2 0.000272988
Salix brachista GWHAAZH00000013 4 CH_sbr_358 2 2 0.00063014
Simmondsia chinensis GWHAASQ00000019 4 CH_sci_215 2 2 0.000255428
Sequoiadendron giganteum chr10 4 CH_sgi_1278 2 2 0.000487151
Sequoiadendron giganteum chr4 4 CH_sgi_547 3 3 0.0000000355983
Trochodendron aralioides group17 4 CH_tar_447 2 2 0.000600366
Theobroma cacao Chromosome_5 4 CH_tca_167 3 5 0.000000321804
Utricularia gibba unitig_37 4 CH_ugi_72 2 2 0.0000820479
Vitis vinifera chr14 4 CH_vvi_135 3 3 0.0000000347148

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001