Functional clusters
Information
- Type Gene Ontology
- Description shikimate 3-dehydrogenase (NADP+) activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-5 | 3 | CH_aar_160 | 2 | 2 | 0.0000912326 |
| Acer truncatum | chr2 | 3 | CH_acertr_15 | 6 | 6 | 1.09735e-18 |
| Actinidia chinensis | Lachesis_group19 | 3 | CH_ach_258 | 2 | 2 | 0.000814819 |
| Aquilegia oxysepala | CHR05 | 3 | CH_aox_267 | 2 | 2 | 0.000481193 |
| Amborella trichopoda | AmTr_v1.0_scaffold00057 | 3 | CH_atr_75 | 3 | 3 | 0.00000000946662 |
| Brassica carinata | ChrC09 | 3 | CH_bca_912 | 2 | 3 | 0.000641272 |
| Camellia sinensis var. sinensis | Chr3 | 3 | CH_camsi_202 | 4 | 23 | 0.0000000127974 |
| Corylus avellana | 2 | 3 | CH_cav_105 | 3 | 3 | 0.0000000881765 |
| Ceratophyllum demersum | 11 | 3 | CH_cde_166 | 2 | 4 | 0.00047384 |
| Carya illinoinensis | Chr07 | 3 | CH_cil_195 | 3 | 3 | 0.00000011526 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 3 | CH_cqu_525 | 2 | 2 | 0.000710732 |
| Capsella rubella | scaffold_3 | 3 | CH_cru_217 | 2 | 2 | 0.0000731154 |
| Davidia involucrata | GWHABJS00000005 | 3 | CH_din_141 | 3 | 3 | 0.000000619075 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_134 | 4 | 25 | 0.000000116202 |
| Manihot esculenta | Chromosome09 | 3 | CH_mes_159 | 3 | 3 | 0.0000000559323 |
| Nelumbo nucifera | chr4 | 3 | CH_nnu_91 | 3 | 5 | 0.000000139203 |
| Punica granatum | NC_045127.1 | 3 | CH_pgr_378 | 2 | 2 | 0.000750356 |
| Punica granatum | NC_045133.1 | 3 | CH_pgr_379 | 2 | 2 | 0.000750356 |
| Prunus persica | Pp06 | 3 | CH_ppe_384 | 2 | 3 | 0.000223789 |
| Pisum sativum | chr7LG7 | 3 | CH_psa_276 | 2 | 2 | 0.00015649 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_195 | 3 | 3 | 0.00000000761368 |
| Populus trichocarpa | Chr13 | 3 | CH_ptr_448 | 2 | 2 | 0.000867002 |
| Salvia bowleyana | GWHASIU00000006 | 3 | CH_sbo_416 | 2 | 2 | 0.000272988 |
| Salix brachista | GWHAAZH00000013 | 3 | CH_sbr_358 | 2 | 2 | 0.00063014 |
| Simmondsia chinensis | GWHAASQ00000019 | 3 | CH_sci_215 | 2 | 2 | 0.000255428 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_1278 | 2 | 2 | 0.000487151 |
| Sequoiadendron giganteum | chr4 | 3 | CH_sgi_547 | 3 | 3 | 0.0000000355983 |
| Trochodendron aralioides | group17 | 3 | CH_tar_447 | 2 | 2 | 0.000600366 |
| Theobroma cacao | Chromosome_5 | 3 | CH_tca_167 | 3 | 5 | 0.000000321804 |
| Utricularia gibba | unitig_37 | 3 | CH_ugi_72 | 2 | 2 | 0.0000820479 |
| Vitis vinifera | chr14 | 3 | CH_vvi_135 | 3 | 3 | 0.0000000347148 |
| Aethionema arabicum | LG-5 | 4 | CH_aar_160 | 2 | 2 | 0.0000912326 |
| Acer truncatum | chr2 | 4 | CH_acertr_15 | 6 | 6 | 1.09735e-18 |
| Actinidia chinensis | Lachesis_group19 | 4 | CH_ach_258 | 2 | 2 | 0.000814819 |
| Aquilegia oxysepala | CHR05 | 4 | CH_aox_267 | 2 | 2 | 0.000481193 |
| Amborella trichopoda | AmTr_v1.0_scaffold00057 | 4 | CH_atr_75 | 3 | 3 | 0.00000000946662 |
| Brassica carinata | ChrC09 | 4 | CH_bca_912 | 2 | 3 | 0.000641272 |
| Camellia sinensis var. sinensis | Chr3 | 4 | CH_camsi_202 | 4 | 23 | 0.0000000127974 |
| Corylus avellana | 2 | 4 | CH_cav_105 | 3 | 3 | 0.0000000881765 |
| Ceratophyllum demersum | 11 | 4 | CH_cde_166 | 2 | 4 | 0.00047384 |
| Carya illinoinensis | Chr07 | 4 | CH_cil_195 | 3 | 3 | 0.00000011526 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 4 | CH_cqu_525 | 2 | 2 | 0.000710732 |
| Capsella rubella | scaffold_3 | 4 | CH_cru_217 | 2 | 2 | 0.0000731154 |
| Davidia involucrata | GWHABJS00000005 | 4 | CH_din_141 | 3 | 3 | 0.000000619075 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_134 | 4 | 25 | 0.000000116202 |
| Manihot esculenta | Chromosome09 | 4 | CH_mes_159 | 3 | 3 | 0.0000000559323 |
| Nelumbo nucifera | chr4 | 4 | CH_nnu_91 | 3 | 5 | 0.000000139203 |
| Punica granatum | NC_045127.1 | 4 | CH_pgr_378 | 2 | 2 | 0.000750356 |
| Punica granatum | NC_045133.1 | 4 | CH_pgr_379 | 2 | 2 | 0.000750356 |
| Prunus persica | Pp06 | 4 | CH_ppe_384 | 2 | 3 | 0.000223789 |
| Pisum sativum | chr7LG7 | 4 | CH_psa_276 | 2 | 2 | 0.00015649 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_195 | 3 | 3 | 0.00000000761368 |
| Populus trichocarpa | Chr13 | 4 | CH_ptr_448 | 2 | 2 | 0.000867002 |
| Salvia bowleyana | GWHASIU00000006 | 4 | CH_sbo_416 | 2 | 2 | 0.000272988 |
| Salix brachista | GWHAAZH00000013 | 4 | CH_sbr_358 | 2 | 2 | 0.00063014 |
| Simmondsia chinensis | GWHAASQ00000019 | 4 | CH_sci_215 | 2 | 2 | 0.000255428 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_1278 | 2 | 2 | 0.000487151 |
| Sequoiadendron giganteum | chr4 | 4 | CH_sgi_547 | 3 | 3 | 0.0000000355983 |
| Trochodendron aralioides | group17 | 4 | CH_tar_447 | 2 | 2 | 0.000600366 |
| Theobroma cacao | Chromosome_5 | 4 | CH_tca_167 | 3 | 5 | 0.000000321804 |
| Utricularia gibba | unitig_37 | 4 | CH_ugi_72 | 2 | 2 | 0.0000820479 |
| Vitis vinifera | chr14 | 4 | CH_vvi_135 | 3 | 3 | 0.0000000347148 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |