Functional clusters
Information
- Type Gene Ontology
- Description hydroxypyruvate reductase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr9 | 3 | CH_acertr_295 | 2 | 2 | 0.000070497 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_5 | 3 | CH_amhyb_186 | 2 | 2 | 0.000505051 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 3 | CH_arhy_283 | 3 | 3 | 0.000000221838 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 3 | CH_arhy_328 | 3 | 4 | 0.000000887261 |
| Brassica carinata | ChrC07 | 3 | CH_bca_190 | 3 | 3 | 0.0000000383844 |
| Brassica napus | A09 | 3 | CH_bna_175 | 3 | 3 | 0.0000000620169 |
| Brassica napus | C08 | 3 | CH_bna_176 | 3 | 3 | 0.0000000620169 |
| Brassica oleracea | C8 | 3 | CH_bol_107 | 3 | 4 | 0.0000000641015 |
| Brassica rapa | A09 | 3 | CH_bra_256 | 2 | 2 | 0.000429314 |
| Camellia sinensis var. sinensis | Chr14 | 3 | CH_camsi_829 | 2 | 3 | 0.000825341 |
| Capsicum annuum | PGAv.1.6.scaffold1561 | 3 | CH_can_83 | 4 | 4 | 0.000000000025373 |
| Cicer arietinum L. | Ca_LG7_v3 | 3 | CH_car_43 | 3 | 5 | 0.000000363416 |
| Citrus clementina | scaffold_3 | 3 | CH_ccl_422 | 2 | 2 | 0.000820311 |
| Carpinus fangiana | Cfa01 | 3 | CH_cfa_159 | 3 | 7 | 0.00000301023 |
| Cucumis melo | chr06 | 3 | CH_cme_60 | 4 | 13 | 0.00000000318274 |
| Cucumis sativus L. | chr3 | 3 | CH_csa_67 | 4 | 10 | 0.00000000183169 |
| Davidia involucrata | GWHABJS00000020 | 3 | CH_din_366 | 2 | 2 | 0.000500125 |
| Durio zibethinus | NW_019167893.1 | 3 | CH_dzi_101 | 3 | 3 | 0.000000064448 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 3 | CH_eca_442 | 2 | 2 | 0.000673083 |
| Eucalyptus grandis | Chr05 | 3 | CH_egr_61 | 8 | 11 | 2.01801e-23 |
| Fragaria x ananassa | Fvb7-1 | 3 | CH_fan_226 | 3 | 4 | 0.00000273188 |
| Glycine max | Gm07 | 3 | CH_gma_51 | 4 | 4 | 0.00000000000246076 |
| Helianthus annuus | HanXRQChr04 | 3 | CH_han_126 | 4 | 4 | 0.0000000000363558 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 3 | CH_lsa_205 | 3 | 3 | 0.000000332904 |
| Magnolia biondii | Chr01 | 3 | CH_mbi_661 | 2 | 3 | 0.00087414 |
| Malus domestica | Chr07 | 3 | CH_mdo_603 | 2 | 2 | 0.000379212 |
| Manihot esculenta | Chromosome05 | 3 | CH_mes_177 | 3 | 3 | 0.000000313221 |
| Punica granatum | NC_045127.1 | 3 | CH_pgr_195 | 3 | 6 | 0.0000033771 |
| Prunus persica | Pp02 | 3 | CH_ppe_44 | 7 | 20 | 3.78384e-17 |
| Pisum sativum | chr4LG4 | 3 | CH_psa_81 | 3 | 3 | 0.0000000408165 |
| Papaver somniferum | NC_039361.1 | 3 | CH_pso_172 | 4 | 8 | 0.00000000171643 |
| Papaver somniferum | NC_039365.1 | 3 | CH_pso_71 | 5 | 7 | 0.0000000000000522167 |
| Phaseolus vulgaris | Chr10 | 3 | CH_pvu_119 | 3 | 4 | 0.000000129554 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 3 | CH_rch_37 | 7 | 11 | 3.44207e-20 |
| Rhododendron simsii | chr02 | 3 | CH_rsi_110 | 4 | 4 | 0.0000000000564366 |
| Sequoiadendron giganteum | chr8 | 3 | CH_sgi_311 | 4 | 4 | 0.00000000000520279 |
| Solanum lycopersicum | SL4.0ch03 | 3 | CH_sly_179 | 3 | 3 | 0.000000289388 |
| Solanum tuberosum | ST4.03ch12 | 3 | CH_stu_574 | 2 | 2 | 0.000512453 |
| Theobroma cacao | Chromosome_3 | 3 | CH_tca_190 | 3 | 4 | 0.00000180202 |
| Theobroma cacao | Chromosome_1 | 3 | CH_tca_75 | 4 | 4 | 0.0000000000825063 |
| Vigna mungo | CM024078.1 | 3 | CH_vmu_26 | 4 | 4 | 0.00000000000404683 |
| Vitis vinifera | chr2 | 3 | CH_vvi_327 | 2 | 2 | 0.000228189 |
| Acer truncatum | chr9 | 4 | CH_acertr_295 | 2 | 2 | 0.000070497 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_5 | 4 | CH_amhyb_186 | 2 | 2 | 0.000505051 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 4 | CH_arhy_283 | 3 | 3 | 0.000000221838 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 4 | CH_arhy_328 | 3 | 4 | 0.000000887261 |
| Brassica carinata | ChrC07 | 4 | CH_bca_190 | 3 | 3 | 0.0000000383844 |
| Brassica napus | A09 | 4 | CH_bna_175 | 3 | 3 | 0.0000000620169 |
| Brassica napus | C08 | 4 | CH_bna_176 | 3 | 3 | 0.0000000620169 |
| Brassica oleracea | C8 | 4 | CH_bol_107 | 3 | 4 | 0.0000000641015 |
| Brassica rapa | A09 | 4 | CH_bra_256 | 2 | 2 | 0.000429314 |
| Camellia sinensis var. sinensis | Chr14 | 4 | CH_camsi_829 | 2 | 3 | 0.000825341 |
| Capsicum annuum | PGAv.1.6.scaffold1561 | 4 | CH_can_83 | 4 | 4 | 0.000000000025373 |
| Cicer arietinum L. | Ca_LG7_v3 | 4 | CH_car_43 | 3 | 5 | 0.000000363416 |
| Citrus clementina | scaffold_3 | 4 | CH_ccl_422 | 2 | 2 | 0.000820311 |
| Carpinus fangiana | Cfa01 | 4 | CH_cfa_159 | 3 | 7 | 0.00000301023 |
| Cucumis melo | chr06 | 4 | CH_cme_60 | 4 | 13 | 0.00000000318274 |
| Cucumis sativus L. | chr3 | 4 | CH_csa_67 | 4 | 10 | 0.00000000183169 |
| Davidia involucrata | GWHABJS00000020 | 4 | CH_din_366 | 2 | 2 | 0.000500125 |
| Durio zibethinus | NW_019167893.1 | 4 | CH_dzi_101 | 3 | 3 | 0.000000064448 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 4 | CH_eca_442 | 2 | 2 | 0.000673083 |
| Eucalyptus grandis | Chr05 | 4 | CH_egr_61 | 8 | 11 | 2.01801e-23 |
| Fragaria x ananassa | Fvb7-1 | 4 | CH_fan_226 | 3 | 4 | 0.00000273188 |
| Glycine max | Gm07 | 4 | CH_gma_51 | 4 | 4 | 0.00000000000246076 |
| Helianthus annuus | HanXRQChr04 | 4 | CH_han_126 | 4 | 4 | 0.0000000000363558 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 4 | CH_lsa_205 | 3 | 3 | 0.000000332904 |
| Magnolia biondii | Chr01 | 4 | CH_mbi_661 | 2 | 3 | 0.00087414 |
| Malus domestica | Chr07 | 4 | CH_mdo_603 | 2 | 2 | 0.000379212 |
| Manihot esculenta | Chromosome05 | 4 | CH_mes_177 | 3 | 3 | 0.000000313221 |
| Punica granatum | NC_045127.1 | 4 | CH_pgr_195 | 3 | 6 | 0.0000033771 |
| Prunus persica | Pp02 | 4 | CH_ppe_44 | 7 | 20 | 3.78384e-17 |
| Pisum sativum | chr4LG4 | 4 | CH_psa_81 | 3 | 3 | 0.0000000408165 |
| Papaver somniferum | NC_039361.1 | 4 | CH_pso_172 | 4 | 8 | 0.00000000171643 |
| Papaver somniferum | NC_039365.1 | 4 | CH_pso_71 | 5 | 7 | 0.0000000000000522167 |
| Phaseolus vulgaris | Chr10 | 4 | CH_pvu_119 | 3 | 4 | 0.000000129554 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 4 | CH_rch_37 | 7 | 11 | 3.44207e-20 |
| Rhododendron simsii | chr02 | 4 | CH_rsi_110 | 4 | 4 | 0.0000000000564366 |
| Sequoiadendron giganteum | chr8 | 4 | CH_sgi_311 | 4 | 4 | 0.00000000000520279 |
| Solanum lycopersicum | SL4.0ch03 | 4 | CH_sly_179 | 3 | 3 | 0.000000289388 |
| Solanum tuberosum | ST4.03ch12 | 4 | CH_stu_574 | 2 | 2 | 0.000512453 |
| Theobroma cacao | Chromosome_3 | 4 | CH_tca_190 | 3 | 4 | 0.00000180202 |
| Theobroma cacao | Chromosome_1 | 4 | CH_tca_75 | 4 | 4 | 0.0000000000825063 |
| Vigna mungo | CM024078.1 | 4 | CH_vmu_26 | 4 | 4 | 0.00000000000404683 |
| Vitis vinifera | chr2 | 4 | CH_vvi_327 | 2 | 2 | 0.000228189 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |