Functional clusters

Information

  • Type Gene Ontology
  • Description endomembrane system

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr2 3 CH_ath_287 16 50 0.00000912451
Arabidopsis thaliana Chr2 3 CH_ath_340 15 46 0.0000254928
Brassica carinata ChrC09 3 CH_bca_526 11 25 0.00005147
Selaginella moellendorffii scaffold_26 3 CH_smo_159 7 8 0.000364785
Solanum tuberosum ST4.03ch02 3 CH_stu_418 11 21 0.0000986878
Arabidopsis thaliana Chr2 4 CH_ath_287 16 50 0.00000912451
Arabidopsis thaliana Chr2 4 CH_ath_340 15 46 0.0000254928
Brassica carinata ChrC09 4 CH_bca_526 11 25 0.00005147
Selaginella moellendorffii scaffold_26 4 CH_smo_159 7 8 0.000364785
Solanum tuberosum ST4.03ch02 4 CH_stu_418 11 21 0.0000986878

Available child term results

Ontology identifier Description Number of clusters
GO:0000139 Golgi membrane 10
GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex 10
GO:0000813 ESCRT I complex 2
GO:0000814 ESCRT II complex 20
GO:0000938 GARP complex 30
GO:0005635 nuclear envelope 4
GO:0005637 nuclear inner membrane 4
GO:0005639 integral component of nuclear inner membrane 2
GO:0005640 nuclear outer membrane 2
GO:0005641 nuclear envelope lumen 2
GO:0005643 nuclear pore 32
GO:0005768 endosome 2
GO:0005769 early endosome 4
GO:0005783 endoplasmic reticulum 20
GO:0005784 Sec61 translocon complex 8
GO:0005785 signal recognition particle receptor complex 12
GO:0005787 signal peptidase complex 18
GO:0005789 endoplasmic reticulum membrane 14
GO:0005794 Golgi apparatus 6
GO:0005795 Golgi stack 2
GO:0005796 Golgi lumen 2
GO:0005797 Golgi medial cisterna 2
GO:0005801 cis-Golgi network 10
GO:0005802 trans-Golgi network 12
GO:0008250 oligosaccharyltransferase complex 6
GO:0009511 plasmodesmatal endoplasmic reticulum 6
GO:0009923 fatty acid elongase complex 6
GO:0010008 endosome membrane 10
GO:0017059 serine C-palmitoyltransferase complex 2
GO:0017119 Golgi transport complex 14
GO:0030121 AP-1 adaptor complex 4
GO:0030122 AP-2 adaptor complex 6
GO:0030126 COPI vesicle coat 8
GO:0030127 COPII vesicle coat 16
GO:0030132 clathrin coat of coated pit 8
GO:0030176 integral component of endoplasmic reticulum membrane 6
GO:0030906 retromer, cargo-selective complex 8
GO:0031080 nuclear pore outer ring 2
GO:0031303 integral component of endosome membrane 4
GO:0031313 extrinsic component of endosome membrane 6
GO:0032541 cortical endoplasmic reticulum 2
GO:0032585 multivesicular body membrane 2
GO:0032588 trans-Golgi network membrane 2
GO:0033263 CORVET complex 4
GO:0034066 Ric1-Rgp1 guanyl-nucleotide exchange factor complex 18
GO:0034663 endoplasmic reticulum chaperone complex 2
GO:0034998 oligosaccharyltransferase I complex 2
GO:0035658 Mon1-Ccz1 complex 12
GO:0042406 extrinsic component of endoplasmic reticulum membrane 2
GO:0042765 GPI-anchor transamidase complex 4
GO:0044611 nuclear pore inner ring 4
GO:0070382 exocytic vesicle 2
GO:0070939 Dsl1/NZR complex 2
GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane 4
GO:0072546 EMC complex 20
GO:0098791 Golgi apparatus subcompartment 2
GO:0098827 endoplasmic reticulum subcompartment 2
GO:1990071 TRAPPII protein complex 16
GO:1990578 perinuclear endoplasmic reticulum membrane 46
GO:1990745 EARP complex 26

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001