Functional clusters
Information
- Type MapMan
- Description Polyamine metabolism
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr4 | 1 | CH_acertr_170 | 4 | 6 | 0.000000729958 |
| Aquilegia oxysepala | CHR02 | 1 | CH_aox_309 | 3 | 5 | 0.000576225 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 1 | CH_arhy_159 | 5 | 6 | 0.000000000581893 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 1 | CH_arhy_160 | 5 | 6 | 0.000000000581893 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 1 | CH_bvu_87 | 5 | 12 | 0.0000000771112 |
| Camellia sinensis var. sinensis | Chr6 | 1 | CH_camsi_399 | 5 | 24 | 0.00000325489 |
| Capsicum annuum | PGAv.1.6.scaffold907 | 1 | CH_can_368 | 3 | 5 | 0.000334822 |
| Corylus avellana | 7 | 1 | CH_cav_216 | 4 | 19 | 0.0000551499 |
| Corylus avellana | 1 | 1 | CH_cav_307 | 3 | 5 | 0.00017824 |
| Carica papaya | supercontig_58 | 1 | CH_cpa_139 | 3 | 4 | 0.0000617794 |
| Daucus carota | DCARv2_Chr8 | 1 | CH_dca_345 | 3 | 6 | 0.000356293 |
| Fragaria x ananassa | Fvb4-1 | 1 | CH_fan_346 | 3 | 3 | 0.0000438187 |
| Fragaria x ananassa | Fvb4-3 | 1 | CH_fan_648 | 3 | 6 | 0.000874927 |
| Lonicera japonica | GWHAAZE00000003 | 1 | CH_lonja_200 | 4 | 5 | 0.000000101314 |
| Magnolia biondii | Chr01 | 1 | CH_mbi_278 | 3 | 4 | 0.0000161283 |
| Manihot esculenta | Chromosome15 | 1 | CH_mes_310 | 3 | 3 | 0.0000642102 |
| Petunia axillaris | Peaxi162Scf00092 | 1 | CH_pax_78 | 4 | 4 | 0.0000000547096 |
| Punica granatum | NC_045131.1 | 1 | CH_pgr_237 | 3 | 4 | 0.0000776507 |
| Papaver somniferum | NC_039359.1 | 1 | CH_pso_394 | 3 | 3 | 0.0000260399 |
| Populus trichocarpa | Chr10 | 1 | CH_ptr_170 | 4 | 4 | 0.0000000648473 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 1 | CH_rch_391 | 4 | 13 | 0.00000425896 |
| Salvia bowleyana | GWHASIU00000007 | 1 | CH_sbo_116 | 4 | 4 | 0.00000000889109 |
| Salix brachista | GWHAAZH00000010 | 1 | CH_sbr_203 | 3 | 3 | 0.0000356427 |
| Acer truncatum | chr4 | 2 | CH_acertr_170 | 4 | 6 | 0.000000729958 |
| Aquilegia oxysepala | CHR02 | 2 | CH_aox_309 | 3 | 5 | 0.000576225 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 2 | CH_arhy_159 | 5 | 6 | 0.000000000581893 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 2 | CH_arhy_160 | 5 | 6 | 0.000000000581893 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 2 | CH_bvu_87 | 5 | 12 | 0.0000000771112 |
| Camellia sinensis var. sinensis | Chr6 | 2 | CH_camsi_399 | 5 | 24 | 0.00000325489 |
| Capsicum annuum | PGAv.1.6.scaffold907 | 2 | CH_can_368 | 3 | 5 | 0.000334822 |
| Corylus avellana | 7 | 2 | CH_cav_216 | 4 | 19 | 0.0000551499 |
| Corylus avellana | 1 | 2 | CH_cav_307 | 3 | 5 | 0.00017824 |
| Carica papaya | supercontig_58 | 2 | CH_cpa_139 | 3 | 4 | 0.0000617794 |
| Daucus carota | DCARv2_Chr8 | 2 | CH_dca_345 | 3 | 6 | 0.000356293 |
| Fragaria x ananassa | Fvb4-1 | 2 | CH_fan_346 | 3 | 3 | 0.0000438187 |
| Fragaria x ananassa | Fvb4-3 | 2 | CH_fan_648 | 3 | 6 | 0.000874927 |
| Lotus japonicus | chr5 | 2 | CH_lja_245 | 3 | 3 | 0.0000647067 |
| Lonicera japonica | GWHAAZE00000003 | 2 | CH_lonja_200 | 4 | 5 | 0.000000101314 |
| Magnolia biondii | Chr01 | 2 | CH_mbi_278 | 3 | 4 | 0.0000161283 |
| Manihot esculenta | Chromosome15 | 2 | CH_mes_310 | 3 | 3 | 0.0000642102 |
| Petunia axillaris | Peaxi162Scf00092 | 2 | CH_pax_78 | 4 | 4 | 0.0000000547096 |
| Punica granatum | NC_045131.1 | 2 | CH_pgr_237 | 3 | 4 | 0.0000776507 |
| Papaver somniferum | NC_039359.1 | 2 | CH_pso_394 | 3 | 3 | 0.0000260399 |
| Populus trichocarpa | Chr10 | 2 | CH_ptr_170 | 4 | 4 | 0.0000000648473 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 2 | CH_rch_391 | 4 | 13 | 0.00000425896 |
| Salvia bowleyana | GWHASIU00000007 | 2 | CH_sbo_116 | 4 | 4 | 0.00000000889109 |
| Salix brachista | GWHAAZH00000010 | 2 | CH_sbr_203 | 3 | 3 | 0.0000356427 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 8.1.1.1 | Polyamine metabolism.putrescine biosynthesis.plastidial/nuclear pathway.arginine decarboxylase | 10 |
| 8.1.1.2 | Polyamine metabolism.putrescine biosynthesis.plastidial/nuclear pathway.agmatine iminohydrolase | 9 |
| 8.1.1.3 | Polyamine metabolism.putrescine biosynthesis.plastidial/nuclear pathway.N-carbamoylputrescine amidohydrolase | 4 |
| 8.1.2.1 | Polyamine metabolism.putrescine biosynthesis.cytosolic pathway.ornithine decarboxylase | 55 |
| 8.2.1 | Polyamine metabolism.spermidine biosynthesis.S-adenosyl methionine decarboxylase | 13 |
| 8.2.2 | Polyamine metabolism.spermidine biosynthesis.spermidine synthase | 2 |
| 8.2.4 | Polyamine metabolism.spermidine biosynthesis.thermospermine synthase | 4 |
| 8.3.1 | Polyamine metabolism.cadaverine biosynthesis.lysine decarboxylase | 39 |
| 8.4.1 | Polyamine metabolism.polyamine conjugation.spermidine disinapoyl transferase | 35 |
| 8.4.2 | Polyamine metabolism.polyamine conjugation.spermidine hydroxycinnamoyl transferase | 15 |
| 8.4.3 | Polyamine metabolism.polyamine conjugation.polyamine N-acetyltransferase (NATA) | 52 |
| 8.5 | Polyamine metabolism.polyamine degradation | 4 |
| 8.5.1 | Polyamine metabolism.polyamine degradation.copper-containing amine oxidase (CuAO) | 108 |
| 8.5.2.1 | Polyamine metabolism.polyamine degradation.FAD-dependent polyamine oxidase activities.cytosolic polyamine oxidase (PAO1) | 26 |
| 8.5.2.2 | Polyamine metabolism.polyamine degradation.FAD-dependent polyamine oxidase activities.peroxisomal polyamine oxidase (PAO2/3/4) | 4 |
| 8.5.2.3 | Polyamine metabolism.polyamine degradation.FAD-dependent polyamine oxidase activities.polyamine oxidase (PAO5) | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |