Functional clusters
Information
- Type MapMan
- Description Polyamine metabolism.polyamine degradation.copper-containing amine oxidase (CuAO)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Acer truncatum | ctg752_3 | 1 | CH_acertr_246 | 3 | 9 | 0.0000525413 |
Aquilegia oxysepala | CHR07 | 1 | CH_aox_74 | 3 | 3 | 0.0000000964818 |
Arabidopsis thaliana | Chr1 | 1 | CH_ath_179 | 3 | 10 | 0.00000241246 |
Brassica rapa | A08 | 1 | CH_bra_363 | 2 | 2 | 0.00064397 |
Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 1 | CH_bvu_56 | 4 | 9 | 0.0000000010723 |
Camellia sinensis var. sinensis | Chr5 | 1 | CH_camsi_37 | 6 | 9 | 1.0729e-17 |
Capsicum annuum | PGAv.1.6.scaffold220 | 1 | CH_can_419 | 2 | 2 | 0.000495663 |
Cicer arietinum L. | Ca_LG4_v3 | 1 | CH_car_316 | 2 | 2 | 0.000778301 |
Coffea canephora | chr3 | 1 | CH_ccan_48 | 3 | 3 | 0.000000000272075 |
Citrus clementina | scaffold_9 | 1 | CH_ccl_43 | 5 | 8 | 0.00000000000011411 |
Carpinus fangiana | Cfa06 | 1 | CH_cfa_49 | 4 | 5 | 0.000000000032581 |
Carya illinoinensis | Chr02 | 1 | CH_cil_127 | 4 | 5 | 0.0000000000535799 |
Citrullus lanatus | CG_Chr06 | 1 | CH_cla_51 | 3 | 4 | 0.000000188867 |
Cucumis melo | chr09 | 1 | CH_cme_315 | 2 | 2 | 0.000667111 |
Cucumis melo | chr05 | 1 | CH_cme_91 | 3 | 3 | 0.0000000667579 |
Corchorus olitorius | AWUE01018369.1 | 1 | CH_col_98 | 2 | 2 | 0.000292099 |
Cucumis sativus L. | chr6 | 1 | CH_csa_118 | 3 | 3 | 0.000000209056 |
Davidia involucrata | GWHABJS00000014 | 1 | CH_din_73 | 4 | 9 | 0.00000000330849 |
Durio zibethinus | NW_019168026.1 | 1 | CH_dzi_138 | 3 | 7 | 0.000002255 |
Erigeron canadensis | Conyza_canadensis_scaffold:5 | 1 | CH_eca_372 | 2 | 2 | 0.000134617 |
Eucalyptus grandis | Chr08 | 1 | CH_egr_275 | 4 | 6 | 0.000000000135318 |
Eutrema salsugineum | scaffold_5 | 1 | CH_esa_336 | 2 | 2 | 0.000761499 |
Fragaria x ananassa | Fvb5-1 | 1 | CH_fan_485 | 3 | 26 | 0.000293284 |
Fragaria vesca | Fvb4 | 1 | CH_fve_133 | 3 | 3 | 0.0000000520576 |
Glycine max | Gm20 | 1 | CH_gma_72 | 4 | 4 | 0.0000000000344506 |
Helianthus annuus | HanXRQChr13 | 1 | CH_han_222 | 3 | 4 | 0.0000000895937 |
Helianthus annuus | HanXRQChr11 | 1 | CH_han_654 | 2 | 2 | 0.000386429 |
Hydrangea macrophylla | Hma1.2p1_0745F.1 | 1 | CH_hma_372 | 2 | 2 | 0.000333259 |
Lonicera japonica | GWHAAZE00000003 | 1 | CH_lonja_649 | 2 | 2 | 0.000898311 |
Lactuca sativa | Lsat_1_v8_lg_6 | 1 | CH_lsa_414 | 2 | 2 | 0.000154202 |
Malus domestica | Chr16 | 1 | CH_mdo_237 | 3 | 5 | 0.000000431359 |
Manihot esculenta | Chromosome03 | 1 | CH_mes_506 | 2 | 2 | 0.000915947 |
Medicago truncatula | chr4 | 1 | CH_mtr_327 | 3 | 4 | 0.000000354476 |
Oryza sativa ssp. japonica | chr06 | 1 | CH_osa_281 | 2 | 3 | 0.000158437 |
Prunus persica | Pp01 | 1 | CH_ppe_170 | 3 | 3 | 0.0000000333888 |
Pisum sativum | chr6LG2 | 1 | CH_psa_312 | 3 | 33 | 0.000222259 |
Papaver somniferum | NC_039365.1 | 1 | CH_pso_707 | 2 | 2 | 0.000810838 |
Populus trichocarpa | Chr01 | 1 | CH_ptr_551 | 2 | 2 | 0.000867002 |
Phaseolus vulgaris | Chr07 | 1 | CH_pvu_80 | 4 | 5 | 0.000000000416436 |
Quercus lobata | 6 | 1 | CH_qlo_125 | 6 | 17 | 0.00000000000000857389 |
Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_771 | 2 | 2 | 0.000597979 |
Rhododendron simsii | chr06 | 1 | CH_rsi_565 | 2 | 2 | 0.000645307 |
Salvia bowleyana | GWHASIU00000002 | 1 | CH_sbo_423 | 2 | 2 | 0.00045498 |
Salix brachista | GWHAAZH00000001 | 1 | CH_sbr_346 | 2 | 2 | 0.000378084 |
Sechium edule | LG04 | 1 | CH_sed_37 | 4 | 4 | 0.0000000000163416 |
Sequoiadendron giganteum | chr4 | 1 | CH_sgi_699 | 3 | 18 | 0.0000290217 |
Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_530 | 2 | 2 | 0.000586941 |
Solanum pennellii | Spenn-ch09 | 1 | CH_spe_489 | 2 | 2 | 0.00044479 |
Solanum tuberosum | ST4.03ch09 | 1 | CH_stu_616 | 2 | 2 | 0.000768679 |
Solanum tuberosum | ST4.03ch09 | 1 | CH_stu_617 | 2 | 2 | 0.000768679 |
Theobroma cacao | Chromosome_4 | 1 | CH_tca_92 | 4 | 8 | 0.000000000412423 |
Tripterygium wilfordii | NC_052245.1 | 1 | CH_twi_118 | 3 | 6 | 0.00000186443 |
Vigna mungo | CM024071.1 | 1 | CH_vmu_40 | 4 | 5 | 0.000000000141624 |
Vitis vinifera | chr5 | 1 | CH_vvi_94 | 4 | 7 | 0.000000000231015 |
Acer truncatum | ctg752_3 | 2 | CH_acertr_246 | 3 | 9 | 0.0000525413 |
Aquilegia oxysepala | CHR07 | 2 | CH_aox_74 | 3 | 3 | 0.0000000964818 |
Arabidopsis thaliana | Chr1 | 2 | CH_ath_179 | 3 | 10 | 0.00000241246 |
Brassica rapa | A08 | 2 | CH_bra_363 | 2 | 2 | 0.00064397 |
Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 2 | CH_bvu_56 | 4 | 9 | 0.0000000010723 |
Camellia sinensis var. sinensis | Chr5 | 2 | CH_camsi_37 | 6 | 9 | 1.0729e-17 |
Capsicum annuum | PGAv.1.6.scaffold220 | 2 | CH_can_419 | 2 | 2 | 0.000495663 |
Cicer arietinum L. | Ca_LG4_v3 | 2 | CH_car_316 | 2 | 2 | 0.000778301 |
Coffea canephora | chr3 | 2 | CH_ccan_48 | 3 | 3 | 0.000000000272075 |
Citrus clementina | scaffold_9 | 2 | CH_ccl_43 | 5 | 8 | 0.00000000000011411 |
Carpinus fangiana | Cfa06 | 2 | CH_cfa_49 | 4 | 5 | 0.000000000032581 |
Carya illinoinensis | Chr02 | 2 | CH_cil_127 | 4 | 5 | 0.0000000000535799 |
Citrullus lanatus | CG_Chr06 | 2 | CH_cla_51 | 3 | 4 | 0.000000188867 |
Cucumis melo | chr09 | 2 | CH_cme_315 | 2 | 2 | 0.000667111 |
Cucumis melo | chr05 | 2 | CH_cme_91 | 3 | 3 | 0.0000000667579 |
Corchorus olitorius | AWUE01018369.1 | 2 | CH_col_98 | 2 | 2 | 0.000292099 |
Cucumis sativus L. | chr6 | 2 | CH_csa_118 | 3 | 3 | 0.000000209056 |
Davidia involucrata | GWHABJS00000014 | 2 | CH_din_73 | 4 | 9 | 0.00000000330849 |
Durio zibethinus | NW_019168026.1 | 2 | CH_dzi_138 | 3 | 7 | 0.000002255 |
Erigeron canadensis | Conyza_canadensis_scaffold:5 | 2 | CH_eca_372 | 2 | 2 | 0.000134617 |
Eucalyptus grandis | Chr08 | 2 | CH_egr_275 | 4 | 6 | 0.000000000135318 |
Eucalyptus grandis | Chr04 | 2 | CH_egr_943 | 2 | 2 | 0.000877912 |
Eutrema salsugineum | scaffold_5 | 2 | CH_esa_336 | 2 | 2 | 0.000761499 |
Fragaria x ananassa | Fvb5-1 | 2 | CH_fan_485 | 3 | 26 | 0.000293284 |
Fragaria vesca | Fvb4 | 2 | CH_fve_133 | 3 | 3 | 0.0000000520576 |
Glycine max | Gm20 | 2 | CH_gma_72 | 4 | 4 | 0.0000000000344506 |
Helianthus annuus | HanXRQChr13 | 2 | CH_han_222 | 3 | 4 | 0.0000000895937 |
Helianthus annuus | HanXRQChr11 | 2 | CH_han_654 | 2 | 2 | 0.000386429 |
Hydrangea macrophylla | Hma1.2p1_0745F.1 | 2 | CH_hma_372 | 2 | 2 | 0.000333259 |
Lonicera japonica | GWHAAZE00000003 | 2 | CH_lonja_649 | 2 | 2 | 0.000898311 |
Lactuca sativa | Lsat_1_v8_lg_6 | 2 | CH_lsa_414 | 2 | 2 | 0.000154202 |
Malus domestica | Chr16 | 2 | CH_mdo_237 | 3 | 5 | 0.000000431359 |
Manihot esculenta | Chromosome03 | 2 | CH_mes_506 | 2 | 2 | 0.000915947 |
Oryza sativa ssp. japonica | chr06 | 2 | CH_osa_281 | 2 | 3 | 0.000158437 |
Prunus persica | Pp01 | 2 | CH_ppe_170 | 3 | 3 | 0.0000000333888 |
Pisum sativum | chr6LG2 | 2 | CH_psa_312 | 3 | 33 | 0.000222259 |
Papaver somniferum | NC_039365.1 | 2 | CH_pso_707 | 2 | 2 | 0.000810838 |
Populus trichocarpa | Chr01 | 2 | CH_ptr_551 | 2 | 2 | 0.000867002 |
Phaseolus vulgaris | Chr07 | 2 | CH_pvu_80 | 4 | 5 | 0.000000000416436 |
Quercus lobata | 6 | 2 | CH_qlo_125 | 6 | 17 | 0.00000000000000857389 |
Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_771 | 2 | 2 | 0.000597979 |
Rhododendron simsii | chr06 | 2 | CH_rsi_565 | 2 | 2 | 0.000645307 |
Salvia bowleyana | GWHASIU00000002 | 2 | CH_sbo_423 | 2 | 2 | 0.00045498 |
Salix brachista | GWHAAZH00000001 | 2 | CH_sbr_346 | 2 | 2 | 0.000378084 |
Sechium edule | LG04 | 2 | CH_sed_37 | 4 | 4 | 0.0000000000163416 |
Sequoiadendron giganteum | chr4 | 2 | CH_sgi_699 | 3 | 18 | 0.0000290217 |
Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_530 | 2 | 2 | 0.000586941 |
Solanum pennellii | Spenn-ch09 | 2 | CH_spe_489 | 2 | 2 | 0.00044479 |
Solanum tuberosum | ST4.03ch09 | 2 | CH_stu_616 | 2 | 2 | 0.000768679 |
Solanum tuberosum | ST4.03ch09 | 2 | CH_stu_617 | 2 | 2 | 0.000768679 |
Theobroma cacao | Chromosome_4 | 2 | CH_tca_92 | 4 | 8 | 0.000000000412423 |
Tripterygium wilfordii | NC_052245.1 | 2 | CH_twi_118 | 3 | 6 | 0.00000186443 |
Vigna mungo | CM024071.1 | 2 | CH_vmu_40 | 4 | 5 | 0.000000000141624 |
Vitis vinifera | chr5 | 2 | CH_vvi_94 | 4 | 7 | 0.000000000231015 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |