Functional clusters

Information

  • Type MapMan
  • Description Polyamine metabolism.polyamine degradation.copper-containing amine oxidase (CuAO)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum ctg752_3 1 CH_acertr_246 3 9 0.0000525413
Aquilegia oxysepala CHR07 1 CH_aox_74 3 3 0.0000000964818
Arabidopsis thaliana Chr1 1 CH_ath_179 3 10 0.00000241246
Brassica rapa A08 1 CH_bra_363 2 2 0.00064397
Beta vulgaris Chr5_EL10_PGA_scaffold2 1 CH_bvu_56 4 9 0.0000000010723
Camellia sinensis var. sinensis Chr5 1 CH_camsi_37 6 9 1.0729e-17
Capsicum annuum PGAv.1.6.scaffold220 1 CH_can_419 2 2 0.000495663
Cicer arietinum L. Ca_LG4_v3 1 CH_car_316 2 2 0.000778301
Coffea canephora chr3 1 CH_ccan_48 3 3 0.000000000272075
Citrus clementina scaffold_9 1 CH_ccl_43 5 8 0.00000000000011411
Carpinus fangiana Cfa06 1 CH_cfa_49 4 5 0.000000000032581
Carya illinoinensis Chr02 1 CH_cil_127 4 5 0.0000000000535799
Citrullus lanatus CG_Chr06 1 CH_cla_51 3 4 0.000000188867
Cucumis melo chr09 1 CH_cme_315 2 2 0.000667111
Cucumis melo chr05 1 CH_cme_91 3 3 0.0000000667579
Corchorus olitorius AWUE01018369.1 1 CH_col_98 2 2 0.000292099
Cucumis sativus L. chr6 1 CH_csa_118 3 3 0.000000209056
Davidia involucrata GWHABJS00000014 1 CH_din_73 4 9 0.00000000330849
Durio zibethinus NW_019168026.1 1 CH_dzi_138 3 7 0.000002255
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_372 2 2 0.000134617
Eucalyptus grandis Chr08 1 CH_egr_275 4 6 0.000000000135318
Eutrema salsugineum scaffold_5 1 CH_esa_336 2 2 0.000761499
Fragaria x ananassa Fvb5-1 1 CH_fan_485 3 26 0.000293284
Fragaria vesca Fvb4 1 CH_fve_133 3 3 0.0000000520576
Glycine max Gm20 1 CH_gma_72 4 4 0.0000000000344506
Helianthus annuus HanXRQChr13 1 CH_han_222 3 4 0.0000000895937
Helianthus annuus HanXRQChr11 1 CH_han_654 2 2 0.000386429
Hydrangea macrophylla Hma1.2p1_0745F.1 1 CH_hma_372 2 2 0.000333259
Lonicera japonica GWHAAZE00000003 1 CH_lonja_649 2 2 0.000898311
Lactuca sativa Lsat_1_v8_lg_6 1 CH_lsa_414 2 2 0.000154202
Malus domestica Chr16 1 CH_mdo_237 3 5 0.000000431359
Manihot esculenta Chromosome03 1 CH_mes_506 2 2 0.000915947
Medicago truncatula chr4 1 CH_mtr_327 3 4 0.000000354476
Oryza sativa ssp. japonica chr06 1 CH_osa_281 2 3 0.000158437
Prunus persica Pp01 1 CH_ppe_170 3 3 0.0000000333888
Pisum sativum chr6LG2 1 CH_psa_312 3 33 0.000222259
Papaver somniferum NC_039365.1 1 CH_pso_707 2 2 0.000810838
Populus trichocarpa Chr01 1 CH_ptr_551 2 2 0.000867002
Phaseolus vulgaris Chr07 1 CH_pvu_80 4 5 0.000000000416436
Quercus lobata 6 1 CH_qlo_125 6 17 0.00000000000000857389
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_771 2 2 0.000597979
Rhododendron simsii chr06 1 CH_rsi_565 2 2 0.000645307
Salvia bowleyana GWHASIU00000002 1 CH_sbo_423 2 2 0.00045498
Salix brachista GWHAAZH00000001 1 CH_sbr_346 2 2 0.000378084
Sechium edule LG04 1 CH_sed_37 4 4 0.0000000000163416
Sequoiadendron giganteum chr4 1 CH_sgi_699 3 18 0.0000290217
Solanum lycopersicum SL4.0ch09 1 CH_sly_530 2 2 0.000586941
Solanum pennellii Spenn-ch09 1 CH_spe_489 2 2 0.00044479
Solanum tuberosum ST4.03ch09 1 CH_stu_616 2 2 0.000768679
Solanum tuberosum ST4.03ch09 1 CH_stu_617 2 2 0.000768679
Theobroma cacao Chromosome_4 1 CH_tca_92 4 8 0.000000000412423
Tripterygium wilfordii NC_052245.1 1 CH_twi_118 3 6 0.00000186443
Vigna mungo CM024071.1 1 CH_vmu_40 4 5 0.000000000141624
Vitis vinifera chr5 1 CH_vvi_94 4 7 0.000000000231015
Acer truncatum ctg752_3 2 CH_acertr_246 3 9 0.0000525413
Aquilegia oxysepala CHR07 2 CH_aox_74 3 3 0.0000000964818
Arabidopsis thaliana Chr1 2 CH_ath_179 3 10 0.00000241246
Brassica rapa A08 2 CH_bra_363 2 2 0.00064397
Beta vulgaris Chr5_EL10_PGA_scaffold2 2 CH_bvu_56 4 9 0.0000000010723
Camellia sinensis var. sinensis Chr5 2 CH_camsi_37 6 9 1.0729e-17
Capsicum annuum PGAv.1.6.scaffold220 2 CH_can_419 2 2 0.000495663
Cicer arietinum L. Ca_LG4_v3 2 CH_car_316 2 2 0.000778301
Coffea canephora chr3 2 CH_ccan_48 3 3 0.000000000272075
Citrus clementina scaffold_9 2 CH_ccl_43 5 8 0.00000000000011411
Carpinus fangiana Cfa06 2 CH_cfa_49 4 5 0.000000000032581
Carya illinoinensis Chr02 2 CH_cil_127 4 5 0.0000000000535799
Citrullus lanatus CG_Chr06 2 CH_cla_51 3 4 0.000000188867
Cucumis melo chr09 2 CH_cme_315 2 2 0.000667111
Cucumis melo chr05 2 CH_cme_91 3 3 0.0000000667579
Corchorus olitorius AWUE01018369.1 2 CH_col_98 2 2 0.000292099
Cucumis sativus L. chr6 2 CH_csa_118 3 3 0.000000209056
Davidia involucrata GWHABJS00000014 2 CH_din_73 4 9 0.00000000330849
Durio zibethinus NW_019168026.1 2 CH_dzi_138 3 7 0.000002255
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_372 2 2 0.000134617
Eucalyptus grandis Chr08 2 CH_egr_275 4 6 0.000000000135318
Eucalyptus grandis Chr04 2 CH_egr_943 2 2 0.000877912
Eutrema salsugineum scaffold_5 2 CH_esa_336 2 2 0.000761499
Fragaria x ananassa Fvb5-1 2 CH_fan_485 3 26 0.000293284
Fragaria vesca Fvb4 2 CH_fve_133 3 3 0.0000000520576
Glycine max Gm20 2 CH_gma_72 4 4 0.0000000000344506
Helianthus annuus HanXRQChr13 2 CH_han_222 3 4 0.0000000895937
Helianthus annuus HanXRQChr11 2 CH_han_654 2 2 0.000386429
Hydrangea macrophylla Hma1.2p1_0745F.1 2 CH_hma_372 2 2 0.000333259
Lonicera japonica GWHAAZE00000003 2 CH_lonja_649 2 2 0.000898311
Lactuca sativa Lsat_1_v8_lg_6 2 CH_lsa_414 2 2 0.000154202
Malus domestica Chr16 2 CH_mdo_237 3 5 0.000000431359
Manihot esculenta Chromosome03 2 CH_mes_506 2 2 0.000915947
Oryza sativa ssp. japonica chr06 2 CH_osa_281 2 3 0.000158437
Prunus persica Pp01 2 CH_ppe_170 3 3 0.0000000333888
Pisum sativum chr6LG2 2 CH_psa_312 3 33 0.000222259
Papaver somniferum NC_039365.1 2 CH_pso_707 2 2 0.000810838
Populus trichocarpa Chr01 2 CH_ptr_551 2 2 0.000867002
Phaseolus vulgaris Chr07 2 CH_pvu_80 4 5 0.000000000416436
Quercus lobata 6 2 CH_qlo_125 6 17 0.00000000000000857389
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_771 2 2 0.000597979
Rhododendron simsii chr06 2 CH_rsi_565 2 2 0.000645307
Salvia bowleyana GWHASIU00000002 2 CH_sbo_423 2 2 0.00045498
Salix brachista GWHAAZH00000001 2 CH_sbr_346 2 2 0.000378084
Sechium edule LG04 2 CH_sed_37 4 4 0.0000000000163416
Sequoiadendron giganteum chr4 2 CH_sgi_699 3 18 0.0000290217
Solanum lycopersicum SL4.0ch09 2 CH_sly_530 2 2 0.000586941
Solanum pennellii Spenn-ch09 2 CH_spe_489 2 2 0.00044479
Solanum tuberosum ST4.03ch09 2 CH_stu_616 2 2 0.000768679
Solanum tuberosum ST4.03ch09 2 CH_stu_617 2 2 0.000768679
Theobroma cacao Chromosome_4 2 CH_tca_92 4 8 0.000000000412423
Tripterygium wilfordii NC_052245.1 2 CH_twi_118 3 6 0.00000186443
Vigna mungo CM024071.1 2 CH_vmu_40 4 5 0.000000000141624
Vitis vinifera chr5 2 CH_vvi_94 4 7 0.000000000231015

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001