Functional clusters
Information
- Type MapMan
- Description Polyamine metabolism.polyamine conjugation.spermidine disinapoyl transferase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-4 | 1 | CH_aar_88 | 3 | 3 | 0.00000149828 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 1 | CH_arhy_65 | 6 | 12 | 0.00000000000000150074 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 1 | CH_arhy_86 | 7 | 57 | 0.0000000000000615131 |
| Brassica napus | C07 | 1 | CH_bna_164 | 4 | 13 | 0.0000000249037 |
| Brassica napus | C03 | 1 | CH_bna_366 | 3 | 7 | 0.0000101143 |
| Brassica napus | A03 | 1 | CH_bna_435 | 3 | 10 | 0.0000346673 |
| Brassica oleracea | C3 | 1 | CH_bol_192 | 3 | 7 | 0.0000092508 |
| Brassica oleracea | C7 | 1 | CH_bol_78 | 4 | 12 | 0.0000000170993 |
| Brassica rapa | A03 | 1 | CH_bra_144 | 3 | 9 | 0.00000464277 |
| Cannabis sativa | NC_044375.1 | 1 | CH_cansat_40 | 5 | 6 | 0.000000000000210833 |
| Cannabis sativa | NC_044375.1 | 1 | CH_cansat_56 | 5 | 10 | 0.00000000000884899 |
| Cardamine hirsuta | Chr6 | 1 | CH_chi_324 | 2 | 2 | 0.000207361 |
| Carica papaya | supercontig_2 | 1 | CH_cpa_245 | 2 | 2 | 0.0000950661 |
| Capsella rubella | scaffold_4 | 1 | CH_cru_120 | 3 | 3 | 0.0000000320764 |
| Eutrema salsugineum | scaffold_1 | 1 | CH_esa_97 | 3 | 3 | 0.000000304449 |
| Medicago truncatula | chr3 | 1 | CH_mtr_90 | 5 | 8 | 0.0000000000000251327 |
| Schrenkiella parvula | ch5-1 | 1 | CH_spa_102 | 3 | 3 | 0.000000325462 |
| Theobroma cacao | Chromosome_9 | 1 | CH_tca_303 | 2 | 2 | 0.0000732386 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_177 | 1 | CH_tpr_401 | 2 | 3 | 0.000681233 |
| Aethionema arabicum | LG-4 | 2 | CH_aar_88 | 3 | 3 | 0.00000149828 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 2 | CH_arhy_65 | 6 | 12 | 0.00000000000000150074 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 2 | CH_arhy_86 | 7 | 57 | 0.0000000000000615131 |
| Brassica oleracea | C3 | 2 | CH_bol_192 | 3 | 7 | 0.0000092508 |
| Brassica oleracea | C7 | 2 | CH_bol_78 | 4 | 12 | 0.0000000170993 |
| Brassica rapa | A03 | 2 | CH_bra_144 | 3 | 9 | 0.00000464277 |
| Cannabis sativa | NC_044375.1 | 2 | CH_cansat_40 | 5 | 6 | 0.000000000000210833 |
| Cannabis sativa | NC_044375.1 | 2 | CH_cansat_56 | 5 | 10 | 0.00000000000884899 |
| Cardamine hirsuta | Chr6 | 2 | CH_chi_324 | 2 | 2 | 0.000207361 |
| Carica papaya | supercontig_2 | 2 | CH_cpa_245 | 2 | 2 | 0.0000950661 |
| Capsella rubella | scaffold_4 | 2 | CH_cru_120 | 3 | 3 | 0.0000000320764 |
| Eutrema salsugineum | scaffold_1 | 2 | CH_esa_97 | 3 | 3 | 0.000000304449 |
| Lotus japonicus | chr6 | 2 | CH_lja_199 | 3 | 8 | 0.00000429345 |
| Schrenkiella parvula | ch5-1 | 2 | CH_spa_102 | 3 | 3 | 0.000000325462 |
| Theobroma cacao | Chromosome_9 | 2 | CH_tca_303 | 2 | 2 | 0.0000732386 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_177 | 2 | CH_tpr_401 | 2 | 3 | 0.000681233 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |