Functional clusters

Information

  • Type MapMan
  • Description Polyamine metabolism.putrescine biosynthesis.cytosolic pathway.ornithine decarboxylase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_340 1 CH_aag_190 2 5 0.000802472
Acer truncatum chr13 1 CH_acertr_350 2 2 0.000070497
Aquilegia oxysepala CHR02 1 CH_aox_344 2 2 0.000801989
Camellia sinensis var. sinensis Chr4 1 CH_camsi_746 2 2 0.000275128
Davidia involucrata GWHABJS00000002 1 CH_din_267 2 2 0.0000500125
Durio zibethinus NW_019168004.1 1 CH_dzi_389 2 3 0.000834235
Fragaria x ananassa Fvb4-3 1 CH_fan_569 2 3 0.000555093
Fragaria vesca Fvb4 1 CH_fve_118 3 3 0.0000000208231
Gossypium raimondii Chr07 1 CH_gra_259 2 2 0.0000536107
Hydrangea macrophylla Hma1.2p1_0023F.1 1 CH_hma_413 2 3 0.000999685
Medicago truncatula chr3 1 CH_mtr_593 2 3 0.000123256
Nelumbo nucifera chr5 1 CH_nnu_418 2 2 0.000436015
Prunus persica Pp08 1 CH_ppe_173 4 34 0.0000000576936
Phaseolus vulgaris Chr09 1 CH_pvu_306 2 2 0.0000734727
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_411 3 10 0.0000100068
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_813 2 2 0.00083717
Rhododendron simsii chr06 1 CH_rsi_367 2 2 0.0000645307
Sechium edule LG03 1 CH_sed_213 2 2 0.0000713419
Sequoiadendron giganteum chr6 1 CH_sgi_946 2 2 0.0000487151
Solanum lycopersicum SL4.0ch03 1 CH_sly_432 2 2 0.000176082
Solanum pennellii Spenn-ch03 1 CH_spe_15 6 6 2.74255e-20
Trochodendron aralioides group6 1 CH_tar_453 2 2 0.00036022
Theobroma cacao Chromosome_5 1 CH_tca_446 2 2 0.000732386
Theobroma cacao Chromosome_8 1 CH_tca_447 2 2 0.000732386
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_329 2 2 0.000227092
Tripterygium wilfordii NC_052242.1 1 CH_twi_80 3 3 0.0000000186494
Vitis vinifera chr11 1 CH_vvi_291 2 2 0.000076063
Anthoceros agrestis Sc2ySwM_340 2 CH_aag_190 2 5 0.000802472
Acer truncatum chr13 2 CH_acertr_350 2 2 0.000070497
Aquilegia oxysepala CHR02 2 CH_aox_344 2 2 0.000801989
Camellia sinensis var. sinensis Chr4 2 CH_camsi_746 2 2 0.000275128
Davidia involucrata GWHABJS00000002 2 CH_din_267 2 2 0.0000500125
Durio zibethinus NW_019168004.1 2 CH_dzi_389 2 3 0.000834235
Fragaria x ananassa Fvb4-3 2 CH_fan_569 2 3 0.000555093
Fragaria vesca Fvb4 2 CH_fve_118 3 3 0.0000000208231
Gossypium hirsutum A11 2 CH_ghi_570 2 2 0.000160209
Gossypium hirsutum D11 2 CH_ghi_571 2 2 0.000160209
Gossypium raimondii Chr07 2 CH_gra_259 2 2 0.0000536107
Hydrangea macrophylla Hma1.2p1_0023F.1 2 CH_hma_413 2 3 0.000999685
Nelumbo nucifera chr5 2 CH_nnu_418 2 2 0.000436015
Prunus persica Pp08 2 CH_ppe_173 4 34 0.0000000576936
Phaseolus vulgaris Chr09 2 CH_pvu_306 2 2 0.0000734727
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_411 3 10 0.0000100068
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_813 2 2 0.00083717
Rhododendron simsii chr06 2 CH_rsi_367 2 2 0.0000645307
Sechium edule LG03 2 CH_sed_213 2 2 0.0000713419
Sequoiadendron giganteum chr6 2 CH_sgi_946 2 2 0.0000487151
Solanum lycopersicum SL4.0ch03 2 CH_sly_432 2 2 0.000176082
Solanum pennellii Spenn-ch03 2 CH_spe_15 6 6 2.74255e-20
Trochodendron aralioides group6 2 CH_tar_453 2 2 0.00036022
Theobroma cacao Chromosome_5 2 CH_tca_446 2 2 0.000732386
Theobroma cacao Chromosome_8 2 CH_tca_447 2 2 0.000732386
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_329 2 2 0.000227092
Tripterygium wilfordii NC_052242.1 2 CH_twi_80 3 3 0.0000000186494
Vitis vinifera chr11 2 CH_vvi_291 2 2 0.000076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001