Functional clusters

Information

  • Type MapMan
  • Description Polyamine metabolism.polyamine conjugation.polyamine N-acetyltransferase (NATA)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr12 1 CH_acertr_362 2 2 0.000070497
Arabidopsis lyrata scaffold_4 1 CH_aly_252 2 2 0.0000660044
Avicennia marina ScioBoG_11560_HRSCAF_11609 1 CH_ama_63 2 2 0.0000862218
Arabidopsis thaliana Chr2 1 CH_ath_236 2 2 0.0000286492
Camellia sinensis var. sinensis Chr1 1 CH_camsi_561 2 2 0.0000458547
Coffea canephora chr2 1 CH_ccan_136 2 3 0.00000425891
Ceratophyllum demersum 1 1 CH_cde_126 2 2 0.0000789796
Carpinus fangiana Cfa01 1 CH_cfa_338 2 4 0.000454373
Cucumis melo chr10 1 CH_cme_69 3 3 0.00000000667579
Capsella rubella scaffold_4 1 CH_cru_140 3 4 0.000000128297
Cucumis sativus L. chr5 1 CH_csa_84 3 3 0.0000000104528
Daucus carota DCARv2_Chr2 1 CH_dca_252 2 2 0.0000637775
Manihot esculenta Chromosome07 1 CH_mes_431 2 2 0.000366379
Petunia axillaris Peaxi162Scf00045 1 CH_pax_321 2 2 0.000422134
Physcomitrium patens Chr05 1 CH_ppa_271 2 3 0.000551426
Populus trichocarpa Chr08 1 CH_ptr_397 2 2 0.0001734
Phaseolus vulgaris Chr07 1 CH_pvu_166 3 8 0.000000453385
Quercus lobata 8 1 CH_qlo_411 3 7 0.00000013993
Salvia bowleyana GWHASIU00000008 1 CH_sbo_406 2 3 0.000409466
Simmondsia chinensis GWHAASQ00000009 1 CH_sci_206 2 3 0.000255417
Sechium edule LG05 1 CH_sed_35 4 4 0.00000000000544719
Sequoiadendron giganteum chr9 1 CH_sgi_970 2 2 0.0000487151
Solanum lycopersicum SL4.0ch08 1 CH_sly_29 7 10 3.0599e-19
Solanum pennellii Spenn-ch08 1 CH_spe_11 7 9 7.24532e-21
Solanum tuberosum ST4.03ch08 1 CH_stu_25 7 9 4.06675e-20
Vanilla planifolia CM028158.1 1 CH_vpl_276 2 2 0.000221664
Acer truncatum chr12 2 CH_acertr_362 2 2 0.000070497
Arabidopsis lyrata scaffold_4 2 CH_aly_252 2 2 0.0000660044
Avicennia marina ScioBoG_11560_HRSCAF_11609 2 CH_ama_63 2 2 0.0000862218
Arabidopsis thaliana Chr2 2 CH_ath_236 2 2 0.0000286492
Camellia sinensis var. sinensis Chr1 2 CH_camsi_561 2 2 0.0000458547
Coffea canephora chr2 2 CH_ccan_136 2 3 0.00000425891
Ceratophyllum demersum 1 2 CH_cde_126 2 2 0.0000789796
Carpinus fangiana Cfa01 2 CH_cfa_338 2 4 0.000454373
Cucumis melo chr10 2 CH_cme_69 3 3 0.00000000667579
Capsella rubella scaffold_4 2 CH_cru_140 3 4 0.000000128297
Cucumis sativus L. chr5 2 CH_csa_84 3 3 0.0000000104528
Daucus carota DCARv2_Chr2 2 CH_dca_252 2 2 0.0000637775
Manihot esculenta Chromosome07 2 CH_mes_431 2 2 0.000366379
Petunia axillaris Peaxi162Scf00045 2 CH_pax_321 2 2 0.000422134
Physcomitrium patens Chr05 2 CH_ppa_271 2 3 0.000551426
Populus trichocarpa Chr08 2 CH_ptr_397 2 2 0.0001734
Phaseolus vulgaris Chr07 2 CH_pvu_166 3 8 0.000000453385
Quercus lobata 8 2 CH_qlo_411 3 7 0.00000013993
Salvia bowleyana GWHASIU00000008 2 CH_sbo_406 2 3 0.000409466
Simmondsia chinensis GWHAASQ00000009 2 CH_sci_206 2 3 0.000255417
Sechium edule LG05 2 CH_sed_35 4 4 0.00000000000544719
Sequoiadendron giganteum chr9 2 CH_sgi_970 2 2 0.0000487151
Solanum lycopersicum SL4.0ch08 2 CH_sly_29 7 10 3.0599e-19
Solanum pennellii Spenn-ch08 2 CH_spe_11 7 9 7.24532e-21
Solanum tuberosum ST4.03ch08 2 CH_stu_25 7 9 4.06675e-20
Vanilla planifolia CM028158.1 2 CH_vpl_276 2 2 0.000221664

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001