Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14466 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 2.7e-138 495.4 254 100.0
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 6.5e-100 367.9 286 71.3
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 1.6e-85 320.1 231 74.5
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 1.0e-84 317.4 216 77.3
vmacro14070 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 5.2e-81 305.1 299 60.5
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 9.1e-78 294.3 243 66.3
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 7.7e-77 291.2 243 64.2
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 9.4e-75 284.3 232 65.9
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 2.1e-74 283.1 237 64.1
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 4.7e-74 282.0 244 62.7
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 1.4e-73 280.4 241 61.8
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.4e-73 280.4 233 63.5
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 8.8e-73 277.7 241 61.8
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.5e-72 276.9 233 62.2
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 5.7e-72 275.0 196 70.9
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 7.5e-72 274.6 245 62.0
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 7.5e-72 274.6 231 66.2
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 2.8e-71 272.7 244 61.1
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 1.4e-70 270.4 244 61.1
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 4.1e-70 268.9 234 63.2
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 9.1e-70 267.7 232 61.6
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 1.2e-69 267.3 232 61.6
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.0e-69 266.5 241 62.2
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 2.7e-69 266.2 241 62.2
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 2.7e-69 266.2 227 62.6
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 4.5e-69 265.4 237 62.9
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 5.9e-69 265.0 241 64.7
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 1.3e-68 263.8 237 58.2
MD03G1112400 Malus domestica HOM05D003203 ORTHO05D003526 2.9e-68 262.7 241 58.9
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 3.8e-68 262.3 242 59.9
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 1.5e-67 260.4 242 61.2
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 1.9e-67 260.0 242 61.2
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 2.5e-67 259.6 239 61.5
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 9.4e-67 257.7 236 61.9
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 8.0e-66 254.6 241 61.4
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 8.0e-66 254.6 230 60.0
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 1.0e-65 254.2 242 60.3
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 1.0e-65 254.2 241 59.8
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 1.4e-65 253.8 230 61.3
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 1.8e-65 253.4 233 61.4
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 3.0e-65 252.7 205 62.9
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 6.8e-65 251.5 233 59.2
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 6.8e-65 251.5 186 69.4
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 1.2e-64 250.8 241 59.8
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.5e-64 250.4 242 59.5
Dinv24673 Davidia involucrata HOM05D003203 ORTHO05D003526 1.5e-64 250.4 197 69.5
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 2.6e-64 249.6 242 58.7
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 5.7e-64 248.4 247 59.5
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 1.3e-63 247.3 259 56.4
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 1.1e-62 244.2 245 60.8
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 4.1e-62 242.3 242 58.7
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 7.0e-62 241.5 240 59.6
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 7.0e-62 241.5 240 59.6
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 7.0e-62 241.5 233 58.4
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 1.2e-61 240.7 238 59.2
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 2.7e-61 239.6 234 56.8
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 7.7e-61 238.0 239 60.3
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 1.7e-60 236.9 250 58.4
Lj3g0013082 Lotus japonicus HOM05D003203 ORTHO05D003526 2.3e-60 236.5 243 56.8
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 2.9e-60 236.1 243 56.8
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 3.8e-60 235.7 226 60.2
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 6.6e-60 235.0 239 55.2
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 8.6e-60 234.6 235 57.4
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 4.3e-59 232.3 230 58.3
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 3.6e-58 229.2 246 56.1
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 3.6e-58 229.2 260 53.1
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 6.1e-58 228.4 230 56.1
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 1.0e-57 227.6 231 56.3
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 1.8e-57 226.9 167 69.5
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 6.8e-57 224.9 240 52.9
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 6.8e-57 224.9 231 56.7
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 6.8e-57 224.9 234 56.4
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 3.4e-56 222.6 224 57.6
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 3.4e-56 222.6 248 51.2
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 7.5e-56 221.5 232 56.0
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 7.5e-56 221.5 128 87.5
Ah.01g014960 Amaranthus hybridus HOM05D003203 ORTHO05D003526 1.3e-55 220.7 226 57.1
Peaxi162Scf00389g00943 Petunia axillaris HOM05D003203 ORTHO05D003526 1.3e-55 220.7 200 59.0
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 1.7e-55 220.3 235 56.2
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 1.7e-55 220.3 220 58.6
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 2.2e-55 219.9 210 60.5
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 2.2e-55 219.9 230 55.7
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 3.7e-55 219.2 288 49.3
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 8.3e-55 218.0 231 56.7
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 2.4e-54 216.5 240 53.3
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 3.2e-54 216.1 209 59.8
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 4.1e-54 215.7 281 49.5
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 1.3e-52 210.7 254 49.6
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 1.7e-52 210.3 219 55.7
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 1.7e-52 210.3 193 59.6
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 4.3e-51 205.7 205 61.0
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 3.6e-50 202.6 225 53.3
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 3.6e-50 202.6 144 70.8
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 3.6e-50 202.6 225 53.3
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 3.6e-50 202.6 225 53.3
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 2.3e-49 199.9 111 85.6
DCAR_024904 Daucus carota HOM05D003203 ORTHO05D003526 3.1e-49 199.5 244 48.0
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 3.1e-49 199.5 230 50.9
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 5.2e-49 198.7 225 52.0
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 6.8e-49 198.4 159 66.7
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 6.8e-49 198.4 159 66.7
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 6.8e-49 198.4 225 52.9
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 2.6e-48 196.4 225 51.6
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 3.4e-48 196.1 149 68.5
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 3.4e-48 196.1 225 52.4
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 3.4e-48 196.1 225 50.7
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 9.8e-48 194.5 178 62.9
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 1.7e-47 193.7 241 51.9
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 2.2e-47 193.4 112 82.1
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 2.9e-47 193.0 161 64.6
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.4e-46 189.9 128 74.2
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 5.4e-46 188.7 171 64.3
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.2e-45 187.6 231 50.6
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.3e-44 184.1 108 81.5
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 5.0e-44 182.2 105 83.8
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.1e-43 181.0 105 82.9
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 7.3e-43 178.3 196 51.0
Gohir.A07G142600 Gossypium hirsutum HOM05D003203 ORTHO05D003526 9.5e-43 177.9 231 48.9
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 9.2e-38 161.4 232 47.0
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.3e-35 152.9 106 70.8
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.3e-35 152.9 106 70.8
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.3e-35 152.9 106 70.8
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.3e-35 152.9 106 70.8
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.3e-35 152.9 106 70.8
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.3e-35 152.9 106 70.8
AagrBONN_evm.TU.Sc2ySwM_117.4032 Anthoceros agrestis HOM05D003203 ORTHO05D003526 9.5e-35 151.4 106 70.8
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.7e-34 149.1 159 52.2
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 8.9e-33 144.8 166 48.8
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 3.4e-32 142.9 103 64.1
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 1.1e-30 137.9 97 67.0
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 2.7e-29 133.3 74 86.5
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 1.1e-27 127.9 101 61.4
Lsat_1_v5_gn_1_45160 Lactuca sativa HOM05D003203 ORTHO05D003526 1.6e-26 124.0 186 45.2
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.4e-22 110.9 105 58.1
Lsat_1_v5_gn_8_153961 Lactuca sativa HOM05D003203 ORTHO05D003526 5.1e-20 102.4 184 42.4
Lsat_1_v5_gn_9_33601 Lactuca sativa HOM05D003172 ORTHO05D003526 8.7e-20 101.7 199 39.2
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 1.6e-18 97.4 113 49.6
Glyma.11G172800 Glycine max HOM05D003203 ORTHO05D003526 9.0e-17 91.7 179 39.7
Lsat_1_v5_gn_8_71460 Lactuca sativa HOM05D006073 ORTHO05D007354 9.0e-17 91.7 77 61.0
MELO3C000359.2 Cucumis melo HOM05D003203 ORTHO05D003526 3.2e-14 83.2 87 52.9
Zm00001eb134270 Zea mays HOM05D003203 ORTHO05D003526 5.4e-14 82.4 61 75.4
Nitab4.5_0010520g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 7.9e-13 78.6 158 38.6
Hund10323 Selenicereus undatus HOM05D003203 ORTHO05D003526 3.1e-09 66.6 113 36.3
PSO063G4818 Papaver somniferum HOM05D003203 ORTHO05D003526 5.3e-09 65.9 122 36.9
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 2.9e-07 60.1 33 78.8
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 2.9e-07 60.1 33 78.8
SEGI_00289 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 7.1e-06 55.5 119 32.8


User provided reference genes

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