Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 0.0e+00 1393.3 730 100.0
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 1.8e-198 696.8 649 66.9
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 9.4e-160 568.2 639 56.8
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 2.0e-154 550.4 642 54.5
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 2.0e-149 533.9 639 54.6
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 1.2e-143 514.6 641 52.1
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 3.1e-139 500.0 647 51.2
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 9.5e-136 488.4 623 51.5
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.6e-135 487.6 607 52.7
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 1.0e-134 485.0 611 51.4
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 5.2e-134 482.6 648 49.8
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 1.6e-130 471.1 645 49.9
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 4.5e-130 469.5 624 50.0
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 1.3e-129 468.0 651 48.4
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 2.3e-129 467.2 649 49.2
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 9.5e-128 461.8 649 49.2
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 1.6e-127 461.1 617 49.4
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 3.6e-127 459.9 624 50.0
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 4.7e-127 459.5 615 50.6
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 1.0e-126 458.4 649 49.2
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 1.0e-126 458.4 618 50.8
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 1.8e-126 457.6 648 50.0
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 2.3e-126 457.2 616 51.0
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 2.3e-126 457.2 606 49.8
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 4.0e-126 456.4 620 47.7
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 5.2e-126 456.1 613 49.9
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 2.6e-125 453.8 613 50.2
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 4.4e-125 453.0 616 49.2
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 7.5e-125 452.2 621 49.1
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 7.5e-125 452.2 612 49.5
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.2e-124 450.7 613 48.6
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 2.2e-124 450.7 614 49.8
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 3.7e-124 449.9 633 48.3
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 6.4e-124 449.1 628 49.4
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 6.4e-124 449.1 614 49.8
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 4.1e-123 446.4 641 46.0
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 1.2e-122 444.9 618 49.2
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 2.0e-122 444.1 372 71.0
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 3.5e-122 443.4 629 46.1
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 7.8e-122 442.2 650 47.2
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 7.8e-122 442.2 607 47.6
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 2.3e-121 440.7 614 46.7
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 8.6e-121 438.7 608 49.7
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 5.6e-120 436.0 604 47.7
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 1.1e-118 431.8 605 47.6
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 5.8e-117 426.0 642 46.9
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 2.2e-116 424.1 627 45.9
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 2.9e-116 423.7 634 46.2
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 4.1e-115 419.9 604 46.4
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 1.0e-113 415.2 646 44.4
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 1.0e-113 415.2 602 46.2
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 1.3e-113 414.8 601 46.8
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 3.0e-113 413.7 636 46.7
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 1.1e-112 411.8 590 49.8
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 3.3e-112 410.2 613 46.7
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 4.3e-112 409.8 605 47.4
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 2.1e-111 407.5 608 46.1
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 3.6e-111 406.8 620 46.1
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 1.5e-109 401.4 601 45.8
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 2.6e-109 400.6 606 44.6
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 3.4e-109 400.2 614 46.1
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 7.5e-109 399.1 607 47.4
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 3.7e-108 396.7 634 44.2
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 4.9e-108 396.4 604 45.9
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 1.4e-107 394.8 609 44.0
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 3.2e-107 393.7 602 42.9
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 9.2e-107 392.1 647 42.0
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 7.8e-106 389.0 611 44.5
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 1.7e-105 387.9 601 43.9
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 2.3e-105 387.5 606 43.6
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 2.3e-105 387.5 620 43.5
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 5.1e-105 386.3 647 41.6
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 4.7e-103 379.8 637 41.9
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 2.4e-102 377.5 604 42.4
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 3.1e-102 377.1 647 40.6
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 6.8e-102 375.9 577 45.6
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 8.9e-102 375.6 647 44.7
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 2.0e-101 374.4 632 40.5
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 1.9e-99 367.9 635 40.5
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 1.6e-98 364.8 647 40.3
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 6.0e-98 362.8 375 58.1
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 1.5e-96 358.2 371 60.4
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 9.6e-96 355.5 633 39.2
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 3.6e-95 353.6 655 39.1
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 2.4e-94 350.9 632 39.6
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 3.4e-93 347.1 547 46.6
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 1.9e-91 341.3 372 54.6
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 2.1e-90 337.8 631 39.3
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 1.3e-89 335.1 547 45.7
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 2.3e-89 334.3 614 40.2
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 5.1e-89 333.2 275 70.5
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 1.7e-84 318.2 607 39.5
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 3.2e-83 313.9 348 56.6
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 1.3e-79 302.0 543 39.2
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 1.4e-78 298.5 517 43.9
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 4.5e-77 293.5 544 43.9
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 5.6e-72 276.6 293 53.6
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 9.6e-72 275.8 464 47.2
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 3.8e-68 263.8 373 47.7
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 9.3e-67 259.2 513 41.5
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 3.0e-65 254.2 313 53.7
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 1.4e-62 245.4 380 42.9
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 3.8e-60 237.3 294 49.7
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 5.1e-57 226.9 364 41.8
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 1.8e-46 191.8 279 47.3
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.5e-43 181.4 589 30.1
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.1e-42 178.3 267 45.7
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 1.1e-40 172.6 102 82.4
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 2.0e-40 171.8 98 83.7
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 1.6e-37 162.2 709 27.1
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 1.3e-36 159.1 92 81.5
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 1.5e-35 155.6 189 54.5
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 2.6e-32 144.8 197 55.8
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 5.0e-28 130.6 177 49.2
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 6.8e-25 120.2 190 46.8
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 1.5e-24 119.0 103 62.1
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 1.3e-23 115.9 100 61.0
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 6.3e-23 113.6 340 30.3
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 3.5e-21 107.8 198 46.5
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 4.7e-18 97.4 123 50.4
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 8.0e-18 96.7 114 45.6
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 2.3e-17 95.1 55 78.2
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 5.7e-16 90.5 148 37.2
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 2.2e-15 88.6 49 81.6
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.2e-13 82.8 95 53.7
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 3.5e-13 81.3 50 76.0
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 3.5e-13 81.3 50 76.0
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 1.1e-11 76.3 52 67.3
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 5.6e-11 73.9 83 43.4
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 9.5e-11 73.2 56 64.3
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 3.6e-10 71.2 50 64.0
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 5.2e-09 67.4 113 38.1
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 1.5e-08 65.9 41 78.0
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 2.9e-07 61.6 37 78.4
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 2.9e-07 61.6 28 100.0
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 3.7e-07 61.2 63 55.6
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 6.4e-07 60.5 62 51.6
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 1.4e-06 59.3 79 45.6


User provided reference genes

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