Gene: Solyc01g110820.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g110820.4
  • Transcript Identifier Solyc01g110820.4.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 89696367-89701472 : negative

Gene Family Information

  • ID HOM05D005431
  • #Genes/#Species 140/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g110820.4.1
  • uniprot A0A3Q7ETT1
  • gene_id Solyc01g110820

Descriptions

  • Description U11/U12 small nuclear ribonucleoprotein 65 kDa protein (AHRD V3.3 *** A0A1J3HYT0_NOCCA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0010229
ISO
PLAZA Integrative Orthologyinflorescence development AT1G09230

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0097157
IBA
GOA Databasepre-mRNA intronic binding
GO:0030626
IBA
GOA DatabaseU12 snRNA binding
GO:0005515
ISO
PLAZA Homology (enrichment)protein binding HOM05D005431

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005689
IBA
GOA DatabaseU12-type spliceosomal complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G09230

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.2.4.2.4 RNA processing.pre-mRNA splicing.U12-type-intron-specific minor spliceosome.U11/U12 small nuclear ribonucleoprotein particle (snRNP).protein factor (U11/U12-65K)