Gene: vmacro12472

General Information

Structural Information

  • Species Vaccinium macrocarpon
  • Gene Identifier vmacro12472
  • Transcript Identifier vmacro12472-RA
  • Gene Type Coding gene
  • Location chr11_Vaccinium_macrocarpon_Stevens_v1 : 17301633-17316395 : negative

Gene Family Information

  • ID HOM05D005431
  • #Genes/#Species 140/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id vmacro12472_Vaccinium_macrocarpon_Stevens_v1

Descriptions

  • Description Similar to SNRNP65: U11/U12 small nuclear ribonucleoprotein 65 kDa protein (Arabidopsis thaliana OX=3702)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010229
ISO
PLAZA Integrative Orthologyinflorescence development AT1G09230
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT1G09230

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0030626
ISO
PLAZA Integrative OrthologyU12 snRNA binding AT1G09230
GO:0097157
ISO
PLAZA Integrative Orthologypre-mRNA intronic binding AT1G09230
GO:0005515
ISO
PLAZA Homology (enrichment)protein binding HOM05D005431

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G09230

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
16.2.4.2.4 RNA processing.pre-mRNA splicing.U12-type-intron-specific minor spliceosome.U11/U12 small nuclear ribonucleoprotein particle (snRNP).protein factor (U11/U12-65K)