Gene: Sopen01g052890

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g052890
  • Transcript Identifier Sopen01g052890.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 108185523-108200200 : negative

Gene Family Information

  • ID HOM05D005431
  • #Genes/#Species 140/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g052890.1

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | LOCATED IN: cellular_component unknown | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009733
IEA
InterProresponse to auxin
GO:0010229
ISO
PLAZA Integrative Orthologyinflorescence development AT1G09230
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT1G09230

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0030626
ISO
PLAZA Integrative OrthologyU12 snRNA binding AT1G09230
GO:0097157
ISO
PLAZA Integrative Orthologypre-mRNA intronic binding AT1G09230
GO:0005515
ISO
PLAZA Homology (enrichment)protein binding HOM05D005431

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G09230

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003676 Small auxin-up RNA
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.2.4.2.4 RNA processing.pre-mRNA splicing.U12-type-intron-specific minor spliceosome.U11/U12 small nuclear ribonucleoprotein particle (snRNP).protein factor (U11/U12-65K)