Gene: FAN16G2474

General Information

Structural Information

Species Fragaria x ananassa
Gene Identifier FAN16G2474
Transcript Identifier FAN16G2474.1
Gene Type Coding gene
Location Fvb3-3 : 21297107-21301413 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D005431
#Genes/#Species 140/94
Phylogenetic origin

ID ORTHO05D006762
#Genes/#Species 138/94
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

id maker-Fvb3-3-augustus-gene-213.30.v1.0.a1
pacid 50534358

Descriptions

Short descriptions
Ortholog descriptions

Description PTHR16105//PTHR16105:SF0 - UNCHARACTERIZED // RNA-BINDING PROTEIN 40

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010229	ISO	PLAZA Integrative Orthology	inflorescence development	AT1G09230
GO:0000398	ISO	PLAZA Integrative Orthology	mRNA splicing, via spliceosome	AT1G09230

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005515	IEA	InterPro	protein binding
GO:0030626	ISO	PLAZA Integrative Orthology	U12 snRNA binding	AT1G09230
GO:0097157	ISO	PLAZA Integrative Orthology	pre-mRNA intronic binding	AT1G09230

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT1G09230

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
IPR034147	RBM40, RNA recognition motif 1
IPR035979	RNA-binding domain superfamily

Mapman id	Description
16.2.4.2.4	RNA processing.pre-mRNA splicing.U12-type-intron-specific minor spliceosome.U11/U12 small nuclear ribonucleoprotein particle (snRNP).protein factor (U11/U12-65K)