Gene: PGSC0003DMG400001606

General Information

Structural Information

Species Solanum tuberosum
Gene Identifier PGSC0003DMG400001606
Transcript Identifier PGSC0003DMT400004068
Gene Type Coding gene
Location ST4.03ch01 : 87026287-87031929 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D005431
#Genes/#Species 140/94
Phylogenetic origin

ID ORTHO05D006762
#Genes/#Species 138/94
Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

pacid 37437002
id PGSC0003DMG400001606.v4.03
uniprot M0ZMU2

Descriptions

Short descriptions
Ortholog descriptions

Description RNA binding protein

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000398	IBA IEA	GOA Database	mRNA splicing, via spliceosome
GO:0010229	IEA	GOA Database	inflorescence development

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	GOA Database	nucleic acid binding
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0003723	IEA	GOA Database	RNA binding
GO:0097157	IBA IEA	GOA Database	pre-mRNA intronic binding
GO:0030626	IBA IEA	GOA Database	U12 snRNA binding
GO:0005515	ISO	PLAZA Homology (enrichment)	protein binding	HOM05D005431

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005689	IBA	GOA Database	U12-type spliceosomal complex
GO:0005634	IEA	GOA Database	nucleus

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
IPR035979	RNA-binding domain superfamily

Mapman id	Description
16.2.4.2.4	RNA processing.pre-mRNA splicing.U12-type-intron-specific minor spliceosome.U11/U12 small nuclear ribonucleoprotein particle (snRNP).protein factor (U11/U12-65K)