Gene: TPR.G5901

General Information

Structural Information

Species Trifolium pratense
Gene Identifier TPR.G5901
Transcript Identifier TPR.T6104
Gene Type Coding gene
Location Tp57577_TGAC_v2_LG6 : 13405607-13410228 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D005431
#Genes/#Species 140/94
Phylogenetic origin

ID ORTHO05D006762
#Genes/#Species 138/94
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

tid Tp57577_TGAC_v2_mRNA6104.v2
id Tp57577_TGAC_v2_gene5901.v2
pacid 35975676
uniprot A0A2K3M2Q0

Descriptions

Ortholog descriptions

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010229	ISO	PLAZA Integrative Orthology	inflorescence development	AT1G09230
GO:0000398	ISO	PLAZA Integrative Orthology	mRNA splicing, via spliceosome	AT1G09230

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	GOA Database	nucleic acid binding
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005515	IEA	InterPro	protein binding
GO:0003723	IEA	GOA Database	RNA binding
GO:0030626	ISO	PLAZA Integrative Orthology	U12 snRNA binding	AT1G09230
GO:0097157	ISO	PLAZA Integrative Orthology	pre-mRNA intronic binding	AT1G09230

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT1G09230

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR035979	RNA-binding domain superfamily
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
IPR034147	RBM40, RNA recognition motif 1
IPR000504	RNA recognition motif domain

Mapman id	Description
16.2.4.2.4	RNA processing.pre-mRNA splicing.U12-type-intron-specific minor spliceosome.U11/U12 small nuclear ribonucleoprotein particle (snRNP).protein factor (U11/U12-65K)