Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 1.6e-197 692.6 350 100.0
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 2.9e-191 671.8 379 91.3
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 1.2e-133 480.3 385 68.8
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 3.3e-126 455.7 338 72.2
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 5.2e-124 448.4 344 68.3
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 2.2e-122 443.0 358 67.0
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 2.3e-119 433.0 388 62.9
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 1.5e-115 420.2 411 58.2
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 9.8e-115 417.5 296 73.0
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 7.0e-113 411.4 391 61.1
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 2.1e-109 399.8 382 59.7
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 4.0e-108 395.6 348 61.8
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 5.2e-108 395.2 366 59.8
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 6.8e-108 394.8 297 70.0
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 1.9e-105 386.7 396 56.3
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 7.1e-105 384.8 281 68.3
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 2.1e-104 383.3 357 59.1
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 3.5e-104 382.5 343 61.2
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 1.7e-103 380.2 301 65.8
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 2.3e-103 379.8 302 65.2
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 5.1e-103 378.6 375 56.5
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 1.2e-101 374.0 317 62.8
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 2.1e-101 373.2 353 58.4
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 1.5e-99 367.1 325 60.9
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 4.4e-99 365.5 374 56.1
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 6.4e-98 361.7 378 55.3
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 1.9e-97 360.1 282 63.5
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.9e-97 360.1 333 59.8
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 3.2e-97 359.4 342 58.8
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 7.1e-97 358.2 310 61.3
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 9.2e-97 357.8 301 61.1
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 1.2e-96 357.5 301 61.1
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.6e-96 357.1 354 55.9
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 1.7e-95 353.6 361 55.1
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 3.0e-95 352.8 371 54.2
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 3.0e-95 352.8 371 54.2
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 3.0e-95 352.8 327 59.0
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 3.9e-95 352.4 289 63.7
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 5.1e-95 352.1 367 56.1
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 6.6e-95 351.7 307 59.3
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 6.6e-95 351.7 345 55.7
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 1.5e-94 350.5 297 61.6
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.5e-94 350.5 297 60.9
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 1.5e-94 350.5 325 56.0
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 5.6e-94 348.6 203 80.8
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.2e-93 347.4 290 61.7
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.2e-93 347.4 249 69.5
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 8.1e-93 344.7 314 58.6
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.4e-92 344.0 355 53.8
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 1.8e-92 343.6 319 56.4
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 1.8e-92 343.6 314 60.2
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 2.4e-92 343.2 348 54.3
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 3.1e-92 342.8 325 57.8
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 3.1e-92 342.8 203 79.8
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.2e-91 340.9 395 51.1
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 2.6e-91 339.7 354 53.7
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 3.4e-91 339.3 304 58.2
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 3.4e-91 339.3 359 56.3
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 4.4e-91 339.0 303 56.8
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 7.6e-91 338.2 290 61.4
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 1.7e-90 337.0 308 58.4
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 2.2e-90 336.7 381 51.2
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 2.9e-90 336.3 206 78.2
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 2.9e-90 336.3 272 61.4
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 3.8e-90 335.9 329 57.1
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 4.9e-90 335.5 341 53.7
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 8.4e-90 334.7 338 55.0
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 2.4e-89 333.2 210 76.2
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 3.2e-89 332.8 302 56.6
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 7.1e-89 331.6 296 59.1
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 9.3e-89 331.3 307 54.4
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.2e-88 330.9 249 64.7
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 1.6e-88 330.5 321 53.6
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 2.7e-88 329.7 373 52.3
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 3.5e-88 329.3 248 64.9
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 6.0e-88 328.6 316 53.8
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 7.8e-88 328.2 306 54.6
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.0e-87 327.8 313 54.6
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 2.3e-87 326.6 287 56.1
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 3.0e-87 326.2 298 55.0
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 1.5e-86 323.9 316 54.4
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 7.3e-86 321.6 243 61.3
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.3e-85 320.9 332 51.5
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 1.6e-85 320.5 379 48.5
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 2.1e-85 320.1 342 55.0
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 4.8e-85 318.9 327 53.5
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 6.2e-85 318.5 318 52.2
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 1.8e-84 317.0 202 75.7
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 3.1e-84 316.2 384 47.9
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.2e-83 314.3 201 74.6
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 1.5e-83 313.9 309 53.7
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 1.5e-83 313.9 343 52.2
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 9.9e-83 311.2 269 61.3
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 6.4e-82 308.5 270 57.8
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.4e-81 307.4 290 52.8
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 1.4e-81 307.4 278 59.4
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 1.2e-80 304.3 319 50.2
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.2e-80 304.3 203 70.0
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 1.6e-80 303.9 298 55.7
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 4.6e-80 302.4 201 71.1
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.0e-79 301.2 319 54.5
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 3.0e-79 299.7 186 75.3
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 5.1e-79 298.9 272 56.6
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 8.7e-79 298.1 243 60.9
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 7.4e-78 295.0 362 48.9
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 9.6e-78 294.7 272 55.9
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 2.8e-77 293.1 293 52.2
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 8.1e-77 291.6 302 53.6
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 4.0e-76 289.3 203 67.5
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 5.3e-76 288.9 202 68.8
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 9.9e-75 284.6 272 54.4
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 3.8e-74 282.7 293 52.9
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 1.2e-72 277.7 211 63.5
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.2e-72 277.7 203 65.0
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 1.0e-71 274.6 348 47.4
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 3.9e-71 272.7 323 51.1
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 9.6e-70 268.1 211 62.1
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 1.2e-67 261.2 182 70.9
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 5.8e-67 258.8 140 85.0
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 2.2e-66 256.9 317 47.9
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.9e-65 253.8 207 61.4
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 2.1e-64 250.4 142 81.7
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 7.4e-62 241.9 242 57.4
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 4.8e-61 239.2 139 79.1
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 4.1e-60 236.1 301 45.5
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 2.6e-59 233.4 173 64.7
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 1.7e-58 230.7 139 73.4
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.1e-56 223.8 139 72.7
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 5.9e-51 205.7 112 81.2
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 9.4e-49 198.4 117 78.6
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 4.4e-46 189.5 207 49.3
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 5.7e-46 189.1 258 43.4
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 7.4e-38 162.2 299 37.1
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 1.2e-35 154.8 99 70.7
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 2.2e-34 150.6 90 76.7
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 4.2e-33 146.4 198 39.9
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.1e-28 131.7 67 88.1
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 3.1e-28 130.2 171 44.4
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 9.1e-28 128.6 110 62.7
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 7.7e-27 125.6 121 57.9
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 2.9e-26 123.6 143 52.4
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 1.5e-25 121.3 95 65.3
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.7e-24 117.1 171 43.9
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 6.3e-21 105.9 101 56.4
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 6.3e-21 105.9 276 33.7
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 1.7e-18 97.8 96 51.0
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 4.0e-15 86.7 62 64.5
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.5e-14 84.7 74 59.5
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 4.4e-14 83.2 56 64.3
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 2.2e-13 80.9 60 63.3
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 3.7e-13 80.1 139 45.3
CAN.G1292.3 Capsicum annuum HOM05D004358 ORTHO05D004960 1.6e-11 74.7 65 53.8
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 2.0e-11 74.3 146 32.9
Haze_01519 Corylus avellana HOM05D004358 ORTHO05D004960 1.7e-10 71.2 239 28.0
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 5.0e-10 69.7 37 78.4
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 1.5e-09 68.2 220 26.4
BcaC01g05951 Brassica carinata HOM05D004358 ORTHO05D004960 3.3e-09 67.0 144 31.2
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.4e-07 61.6 91 35.2
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 7.5e-06 55.8 167 26.3


User provided reference genes

Program Settings