Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 3.2e-218 761.5 401 100.0
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 1.1e-202 709.9 447 87.0
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 2.3e-152 542.7 450 67.8
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 1.3e-150 537.0 446 69.3
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 2.2e-147 526.2 443 69.8
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 4.2e-146 521.9 429 69.5
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 2.3e-144 516.2 450 67.3
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 2.6e-143 512.7 447 65.5
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 3.5e-140 502.3 441 64.9
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 7.7e-140 501.1 445 64.9
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 6.8e-136 488.0 487 59.3
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 1.4e-133 480.3 381 74.5
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 4.1e-133 478.8 459 61.7
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 6.6e-131 471.5 452 61.1
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 5.6e-130 468.4 443 61.2
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 4.7e-129 465.3 404 66.1
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 4.7e-129 465.3 448 61.6
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 2.3e-128 463.0 457 60.8
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 1.2e-127 460.7 450 61.3
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 1.7e-126 456.8 445 61.8
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 8.3e-126 454.5 452 60.6
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 1.9e-125 453.4 444 60.4
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 3.2e-125 452.6 449 61.0
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 9.2e-125 451.1 446 61.0
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 6.0e-124 448.4 454 59.9
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 6.0e-124 448.4 452 60.4
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 6.0e-124 448.4 441 59.9
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 1.7e-123 446.8 453 58.9
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 3.3e-122 442.6 440 60.2
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 4.3e-122 442.2 452 60.0
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 6.2e-121 438.3 454 59.0
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 2.3e-120 436.4 442 60.0
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 5.2e-120 435.3 449 58.6
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 1.2e-119 434.1 451 59.2
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 3.4e-119 432.6 444 59.7
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 9.8e-119 431.0 442 60.2
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 6.4e-118 428.3 458 58.7
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 4.1e-117 425.6 440 58.6
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 5.4e-117 425.2 486 53.7
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 9.2e-117 424.5 442 59.7
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.2e-116 424.1 459 55.6
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 1.2e-116 424.1 457 58.9
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 2.1e-116 423.3 457 58.0
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 6.0e-116 421.8 451 57.0
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 6.0e-116 421.8 445 57.8
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.7e-115 420.2 460 55.7
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 2.3e-115 419.9 445 57.5
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 3.9e-115 419.1 439 54.9
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 2.5e-114 416.4 445 58.2
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 3.6e-113 412.5 449 58.4
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 1.1e-112 411.0 455 53.8
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 8.9e-112 407.9 433 57.0
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 1.5e-111 407.1 437 54.9
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 3.8e-110 402.5 431 56.8
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 1.1e-109 401.0 431 56.1
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 9.2e-109 397.9 441 56.7
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 1.6e-108 397.1 452 56.0
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 3.5e-108 396.0 446 54.7
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 5.1e-107 392.1 445 51.7
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 8.6e-107 391.3 439 54.4
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 2.8e-105 386.3 431 55.0
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 8.1e-105 384.8 432 56.2
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 8.1e-105 384.8 435 53.8
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 1.1e-104 384.4 434 53.9
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 1.8e-104 383.6 439 51.7
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 5.2e-104 382.1 423 56.3
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 3.4e-103 379.4 443 51.2
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 3.4e-103 379.4 438 51.6
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 1.7e-102 377.1 441 54.4
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 1.7e-102 377.1 430 51.6
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 6.4e-102 375.2 434 51.6
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 8.4e-102 374.8 431 51.3
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 7.1e-101 371.7 443 50.3
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 9.3e-101 371.3 460 49.8
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 7.8e-100 368.2 431 50.8
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 6.6e-99 365.2 431 50.1
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 7.3e-98 361.7 451 53.2
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 2.4e-96 356.7 432 49.3
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 5.3e-96 355.5 407 55.8
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 2.0e-95 353.6 432 49.8
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 9.9e-95 351.3 439 48.7
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 1.4e-93 347.4 331 63.7
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 7.1e-93 345.1 333 64.0
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 2.1e-92 343.6 455 46.2
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 7.9e-92 341.7 451 49.2
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 2.3e-91 340.1 315 65.4
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 8.7e-91 338.2 449 48.3
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 1.9e-90 337.0 329 62.0
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 4.3e-90 335.9 614 40.2
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 1.3e-89 334.3 344 58.4
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 4.5e-87 325.9 330 59.1
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 2.1e-84 317.0 320 59.4
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 2.3e-83 313.5 438 46.1
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 2.5e-77 293.5 316 53.8
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 8.7e-75 285.0 397 44.6
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 6.1e-68 262.3 304 57.9
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 3.3e-66 256.5 382 45.0
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 2.7e-60 236.9 396 43.2
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 1.1e-58 231.5 243 62.1
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.8e-56 224.2 385 40.8
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.4e-56 223.8 328 47.9
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 7.9e-52 208.8 182 58.8
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 2.0e-50 204.1 161 73.3
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.7e-49 201.1 261 53.6
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 2.4e-48 197.2 326 44.8
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 5.9e-47 192.6 267 46.4
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 4.8e-41 172.9 147 62.6
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 1.8e-35 154.5 281 42.7
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 2.8e-33 147.1 598 27.9
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 8.3e-33 145.6 280 38.6
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 8.3e-25 119.0 164 56.1
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 5.4e-24 116.3 92 66.3
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 2.7e-23 114.0 63 84.1
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 5.9e-23 112.8 154 57.1
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 2.3e-22 110.9 61 86.9
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 3.8e-22 110.2 68 76.5
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 1.8e-19 101.3 135 51.9
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 5.7e-18 96.3 63 77.8
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 8.3e-17 92.4 255 38.0
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 4.1e-16 90.1 44 88.6
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 3.5e-15 87.0 49 81.6
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 3.5e-15 87.0 49 81.6
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 7.3e-13 79.3 319 27.3
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 2.3e-11 74.3 50 66.0
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 4.4e-10 70.1 104 43.3
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 2.2e-09 67.8 60 51.7
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 4.9e-09 66.6 73 46.6
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 8.3e-09 65.9 65 55.4
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 4.1e-08 63.5 33 87.9
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 5.4e-08 63.2 45 55.6
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 9.2e-08 62.4 42 71.4
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 2.7e-07 60.8 54 59.3
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 3.0e-06 57.4 38 73.7


User provided reference genes

Program Settings