Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 4.1e-256 887.9 555 100.0
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 6.8e-235 817.4 556 92.1
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 1.7e-193 679.9 555 76.2
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 6.4e-193 677.9 555 74.6
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 2.1e-191 672.9 555 71.9
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 3.4e-186 655.6 554 71.3
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 8.4e-185 651.0 556 71.4
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 8.4e-185 651.0 555 74.8
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 1.6e-183 646.7 555 70.8
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 3.1e-179 632.5 556 69.4
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.6e-178 629.4 556 73.2
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 4.6e-175 618.6 576 67.5
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 7.9e-175 617.8 555 68.1
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 1.3e-174 617.1 554 72.7
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.0e-174 615.9 557 70.4
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.1e-173 614.0 557 67.7
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 3.3e-173 612.5 557 69.5
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 3.3e-173 612.5 555 67.6
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.7e-172 609.0 557 68.2
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 6.2e-172 608.2 557 70.4
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 1.4e-171 607.1 555 69.0
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.2e-167 594.0 563 70.2
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 1.2e-167 594.0 553 68.7
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 2.7e-167 592.8 557 67.1
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.8e-166 590.1 556 69.1
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 3.9e-166 589.0 555 68.3
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 1.3e-164 583.9 559 63.3
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.1e-164 583.2 556 68.2
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 3.7e-164 582.4 556 68.0
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 6.9e-163 578.2 557 67.7
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.0e-161 574.3 560 66.6
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.7e-161 573.5 563 68.4
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 2.5e-160 569.7 555 67.7
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 7.9e-159 564.7 554 61.6
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.3e-158 563.9 593 63.9
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.3e-158 563.9 593 63.9
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 1.3e-158 563.9 557 63.6
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.8e-158 563.5 553 66.4
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 3.0e-158 562.8 564 66.1
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 6.7e-158 561.6 554 62.6
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 6.3e-156 555.1 557 72.7
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 6.3e-156 555.1 548 61.7
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.1e-155 554.3 553 66.2
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 6.9e-155 551.6 555 66.3
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.9e-154 548.5 561 69.5
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 5.9e-154 548.5 561 70.6
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 7.6e-154 548.1 556 64.2
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.7e-153 547.0 557 67.3
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 6.5e-153 545.0 555 64.1
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.1e-152 544.3 558 66.8
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.1e-152 544.3 557 65.7
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.2e-151 540.8 568 64.1
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 2.1e-151 540.0 592 64.7
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.7e-151 539.7 561 70.2
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.8e-150 537.0 552 65.9
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 1.5e-149 533.9 540 68.3
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 7.4e-149 531.6 559 66.7
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 9.7e-149 531.2 553 63.7
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.7e-148 529.3 552 62.1
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.1e-147 527.7 570 65.1
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 1.8e-147 526.9 559 63.5
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.2e-146 524.2 567 64.0
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 1.7e-145 520.4 522 69.9
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 2.9e-145 519.6 558 60.4
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 2.1e-143 513.5 558 65.6
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 7.9e-143 511.5 562 61.7
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 5.1e-142 508.8 574 62.7
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 5.1e-142 508.8 556 64.0
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 3.3e-141 506.1 560 64.1
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.7e-141 505.4 562 61.0
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.7e-140 503.8 557 56.9
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.8e-140 503.1 560 54.6
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 3.1e-139 499.6 560 58.4
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 3.1e-139 499.6 556 65.5
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 3.1e-139 499.6 517 62.1
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.6e-138 496.5 361 77.3
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 3.4e-138 496.1 595 58.2
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 3.4e-138 496.1 526 65.0
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 4.5e-138 495.7 511 61.4
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 4.5e-138 495.7 517 61.7
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 5.5e-136 488.8 558 65.4
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 5.5e-136 488.8 558 65.4
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 5.5e-136 488.8 587 56.4
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 7.2e-136 488.4 557 65.4
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 7.2e-136 488.4 561 63.3
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 3.6e-135 486.1 565 53.3
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 3.6e-135 486.1 548 61.7
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.8e-134 483.8 500 65.0
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 6.7e-134 481.9 557 64.8
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 6.7e-134 481.9 558 64.7
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 1.5e-133 480.7 537 64.8
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 2.8e-132 476.5 555 63.6
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.8e-132 475.7 600 54.2
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 8.2e-132 474.9 574 59.4
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 3.1e-131 473.0 574 55.7
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 4.1e-131 472.6 477 67.7
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 5.3e-131 472.2 537 61.1
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.0e-129 468.0 576 54.3
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.7e-129 467.2 573 51.8
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 8.5e-129 464.9 546 54.6
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 3.0e-126 456.4 563 61.5
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.2e-125 454.5 559 61.4
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 4.4e-125 452.6 556 61.2
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 4.1e-123 446.0 550 58.5
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 9.1e-123 444.9 554 57.9
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.1e-123 444.9 591 53.1
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.9e-121 439.9 538 56.9
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 9.4e-120 434.9 554 56.9
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 6.1e-119 432.2 852 41.5
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 5.2e-118 429.1 544 57.2
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 8.3e-116 421.8 505 62.0
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 4.5e-114 416.0 560 57.1
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 4.5e-114 416.0 477 63.7
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.0e-113 414.8 592 51.7
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.3e-113 414.5 558 55.0
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 1.1e-112 411.4 554 54.5
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 3.3e-112 409.8 500 56.0
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 4.0e-110 402.9 554 56.3
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 4.0e-110 402.9 554 56.3
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 3.4e-109 399.8 559 47.8
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 7.8e-106 388.7 563 49.2
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.9e-104 384.0 531 57.4
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 9.8e-101 371.7 328 62.5
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 1.6e-98 364.4 556 48.6
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.0e-97 360.1 565 48.0
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 3.9e-97 359.8 565 48.0
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.9e-97 359.8 552 49.3
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.6e-97 358.6 552 49.1
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.5e-96 357.8 562 47.7
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.5e-96 357.8 563 46.5
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 2.1e-95 354.0 419 67.1
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 3.4e-93 346.7 565 42.3
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 9.8e-93 345.1 454 62.3
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 2.1e-90 337.4 558 41.6
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 2.7e-90 337.0 567 42.3
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 2.8e-87 327.0 195 79.5
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.1e-86 325.1 439 50.8
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 8.3e-84 315.5 378 66.7
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 3.0e-81 307.0 376 61.2
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.0e-77 294.3 353 51.6
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 5.4e-75 286.2 329 66.6
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.8e-62 244.6 331 47.1
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 3.1e-62 243.8 311 53.7
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-57 228.4 518 39.2
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 1.5e-56 224.9 378 56.3
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.8e-49 201.4 225 57.3
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.3e-47 195.3 365 52.1
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 4.1e-38 163.7 110 85.5
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 2.9e-36 157.5 113 82.3
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.8e-36 157.1 178 71.9
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 3.8e-36 157.1 166 71.7
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.4e-35 155.2 101 69.3
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-32 145.2 254 38.6
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 8.5e-28 129.4 77 89.6
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 8.5e-28 129.4 77 89.6
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.6e-26 125.2 91 87.9
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 8.8e-25 119.4 90 82.2
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.5e-24 118.6 223 41.7
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 3.1e-22 110.9 272 39.0
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 7.7e-21 106.3 136 41.9
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.3e-20 105.5 315 30.8
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.0e-20 103.6 219 45.7
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 6.1e-18 96.7 178 41.6
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 8.0e-18 96.3 54 75.9
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 6.7e-17 93.2 51 80.4
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 1.1e-16 92.4 56 80.4
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.7e-12 78.6 119 50.4
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 5.5e-11 73.6 103 45.6
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 7.2e-11 73.2 59 61.0
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.1e-10 71.6 218 33.0
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.7e-10 70.5 237 40.9
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 8.0e-10 69.7 70 55.7
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 1.0e-09 69.3 72 52.8
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 9.7e-08 62.8 253 31.6
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.8e-07 60.5 122 31.1
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 1.8e-06 58.5 57 50.9
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 3.1e-06 57.8 55 58.2
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 4.1e-06 57.4 66 50.0


User provided reference genes

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