Gene: AT4G12610

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G12610
  • Transcript Identifier AT4G12610.1
  • Gene Type Coding gene
  • Location Chr4 : 7454970-7457465 : positive

Gene Family Information

  • ID HOM05D003850
  • #Genes/#Species 180/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G12610.1
  • symbol RAP74
  • uniprot Q9SU25

Descriptions

  • Description transcription initiation factor IIF subunit alpha RAP74
  • Computational description RAP74; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, transcription activator activity, DNA binding, catalytic activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, positive regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot, root, guard cell; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIF, alpha subunit (InterPro:IPR008851), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039); Has 33758 Blast hits to 21623 proteins in 1111 species: Archae - 118; Bacteria - 4904; Metazoa - 11974; Fungi - 5901; Plants - 2006; Viruses - 435; Other Eukaryotes - 8420 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032968
IEA
Gene Ontologypositive regulation of transcription elongation from RNA polymerase II promoter
GO:0032968
IEA
InterPropositive regulation of transcription elongation from RNA polymerase II promoter
GO:0006367
IEA
GOA Databasetranscription initiation from RNA polymerase II promoter
GO:0006367
IBA
Gene Ontologytranscription initiation from RNA polymerase II promoter1
GO:0006367
IEA
InterProtranscription initiation from RNA polymerase II promoter

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008022
IPI
Gene Ontologyprotein C-terminus binding2
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0001096
IBA
Gene OntologyTFIIF-class transcription factor complex binding1
GO:0016251
IBA
Gene OntologyRNA polymerase II general transcription initiation factor activity1
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus2
GO:0005634
IEA
InterPronucleus
GO:0005674
IBA
Gene Ontologytranscription factor TFIIF complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036390 Winged helix DNA-binding domain superfamily
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR011039 Transcription Factor IIF, Rap30/Rap74, interaction
IPR008851 Transcription initiation factor IIF, alpha subunit
Mapman id Description
15.3.3.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIf basal transcription factor heterodimer.subunit alpha