Gene: Pp3c3_2280

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c3_2280
  • Transcript Identifier Pp3c3_2280V3.3
  • Gene Type Coding gene
  • Location Chr03 : 1342792-1346228 : positive

Gene Family Information

  • ID HOM05D003850
  • #Genes/#Species 180/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c3_2280V3.3
  • pacid 32940572
  • alias Phpat.003G009900
  • alias Phypa_50627
  • alias Pp1s1_420V6
  • uniprot A0A2K1KSY4

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006367
IBA
IEA
GOA Databasetranscription initiation from RNA polymerase II promoter
GO:0006367
IEA
InterProtranscription initiation from RNA polymerase II promoter
GO:0032968
IEA
GOA Databasepositive regulation of transcription elongation from RNA polymerase II promoter
GO:0032968
IEA
InterPropositive regulation of transcription elongation from RNA polymerase II promoter

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0001096
IBA
GOA DatabaseTFIIF-class transcription factor complex binding
GO:0016251
IBA
GOA DatabaseRNA polymerase II general transcription initiation factor activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G12610
GO:0008022
ISO
PLAZA Integrative Orthologyprotein C-terminus binding AT4G12610

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus
GO:0005674
IBA
GOA Databasetranscription factor TFIIF complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR008851 Transcription initiation factor IIF, alpha subunit
IPR011039 Transcription Factor IIF, Rap30/Rap74, interaction
IPR036390 Winged helix DNA-binding domain superfamily
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
15.3.3.4.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIf basal transcription factor heterodimer.subunit alpha