Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 0.0e+00 1508.8 758 100.0
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 0.0e+00 1097.0 776 71.6
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 0.0e+00 1091.6 744 73.4
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 0.0e+00 1089.3 735 74.1
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 2.4e-307 1058.5 753 70.5
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 4.1e-307 1057.7 753 70.5
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 2.6e-306 1055.0 745 71.9
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 7.9e-303 1043.5 752 70.1
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 1.5e-301 1039.3 715 71.7
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 1.3e-297 1026.2 700 71.3
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 8.2e-284 980.3 776 64.0
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 2.5e-280 968.8 769 62.8
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 2.5e-280 968.8 782 61.4
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 2.5e-280 968.8 764 62.7
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 2.3e-278 962.2 741 64.4
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 5.2e-278 961.1 750 64.1
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 1.5e-277 959.5 770 62.1
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 2.8e-276 955.3 754 63.7
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 1.1e-275 953.4 746 62.3
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 9.1e-275 950.3 746 62.7
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 2.7e-274 948.7 764 62.4
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 7.7e-274 947.2 746 63.4
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 1.1e-272 943.3 760 62.9
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 1.6e-271 939.5 759 62.2
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 2.6e-269 932.2 742 62.0
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 2.6e-269 932.2 777 60.5
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 1.3e-268 929.9 710 63.4
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 1.3e-268 929.9 735 62.2
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 3.7e-268 928.3 743 62.6
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.4e-267 925.6 743 61.8
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.3e-265 919.8 738 61.4
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 8.6e-265 917.1 729 62.3
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-264 916.8 650 67.4
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 1.1e-264 916.8 768 60.7
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 4.2e-264 914.8 707 63.9
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 5.5e-264 914.4 751 61.0
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 7.2e-264 914.1 707 63.9
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.2e-263 913.3 737 61.6
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 8.0e-263 910.6 734 62.0
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 4.0e-262 908.3 745 60.8
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 2.8e-260 902.1 732 61.7
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 6.3e-260 901.0 737 61.3
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 8.3e-260 900.6 735 61.4
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 1.6e-258 896.3 742 61.1
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 1.7e-257 892.9 750 59.9
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 4.0e-254 881.7 695 62.3
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 4.0e-254 881.7 610 70.8
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 4.9e-252 874.8 750 60.0
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 7.0e-251 870.9 729 58.6
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 1.7e-249 866.3 762 58.5
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 2.3e-249 865.9 729 59.7
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 8.6e-249 864.0 755 58.1
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.6e-248 861.3 689 63.0
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 3.6e-247 858.6 758 57.5
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 1.4e-246 856.7 752 59.0
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 2.2e-244 849.4 737 56.4
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 1.0e-241 840.5 743 55.9
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 1.3e-241 840.1 743 55.3
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 5.1e-241 838.2 713 57.9
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 6.6e-241 837.8 680 59.0
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 8.6e-241 837.4 759 57.0
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 5.6e-240 834.7 735 57.3
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 1.6e-239 833.2 737 57.7
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 8.1e-239 830.9 734 57.1
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 2.3e-238 829.3 762 56.4
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 1.5e-237 826.6 777 53.8
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 4.4e-237 825.1 693 58.9
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 7.1e-235 817.8 711 55.3
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 1.2e-234 817.0 724 55.5
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 1.2e-234 817.0 724 55.5
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 1.2e-234 817.0 724 55.5
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 6.0e-234 814.7 611 64.6
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 3.3e-232 808.9 744 55.1
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 9.6e-232 807.4 711 54.7
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 4.7e-231 805.1 752 54.1
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 2.0e-229 799.7 734 54.1
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 5.8e-229 798.1 705 56.0
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 5.8e-229 798.1 764 53.1
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 9.3e-227 790.8 746 54.6
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 1.2e-226 790.4 713 55.0
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 1.6e-226 790.0 758 54.0
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 3.5e-226 788.9 759 51.9
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 2.5e-224 782.7 763 54.3
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 7.6e-221 771.2 749 51.4
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 4.9e-220 768.5 767 50.8
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 1.1e-219 767.3 650 57.5
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 3.2e-219 765.8 735 51.8
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 1.3e-217 760.4 574 64.8
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 9.6e-216 754.2 650 56.9
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 1.6e-215 753.4 728 53.6
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 2.0e-213 746.5 717 54.0
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 4.5e-213 745.3 653 55.4
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 7.1e-211 738.0 729 51.6
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 2.8e-207 726.1 758 50.0
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.2e-202 710.7 635 54.3
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 6.0e-202 708.4 536 63.4
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 6.5e-188 661.8 746 50.3
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.1e-178 630.2 758 46.8
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 4.5e-173 612.5 699 45.5
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.1e-163 581.3 525 56.6
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 5.0e-156 555.8 649 45.6
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 4.0e-137 493.0 457 54.7
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 2.3e-129 467.2 368 60.1
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 3.9e-116 423.3 682 39.7
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 2.9e-111 407.1 518 44.0
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 1.2e-109 401.7 306 65.0
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 3.0e-100 370.5 473 44.8
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.1e-93 347.8 317 58.0
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 9.3e-86 322.4 727 30.0
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 2.1e-85 321.2 196 90.8
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-75 288.9 309 48.5
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 5.7e-75 286.6 642 29.9
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 1.8e-73 281.6 374 46.3
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 6.1e-61 240.0 661 25.7
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 3.9e-60 237.3 681 26.0
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 3.7e-42 177.6 669 23.3
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 8.3e-42 176.4 195 50.8
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.0e-36 159.5 654 23.1
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 1.7e-31 142.1 198 41.9
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 5.7e-27 127.1 172 47.1
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 2.0e-16 92.0 605 20.2
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 7.3e-14 83.6 122 41.8
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 4.0e-12 77.8 743 19.1
FvH4_3g28010 Fragaria vesca HOM05D000001 ORTHO05D000003 2.0e-11 75.5 432 22.2
FAN11G1860 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.0e-11 75.5 432 22.2
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 2.0e-11 75.5 48 68.8
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 2.9e-10 71.6 63 54.0
FAN21G2622 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.9e-10 71.6 231 24.2
FAN25G0122 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.9e-10 71.6 280 22.5
FAN16G1783 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.1e-09 69.7 231 23.4
FAN25G0874 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.4e-09 69.3 568 19.5
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 1.4e-09 69.3 54 57.4
Lalb_Chr12g0200631 Lupinus albus HOM05D001779 ORTHO05D001753 5.4e-09 67.4 360 19.7
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 7.1e-09 67.0 56 58.9
Hma1.2p1_0386F.1_g141780 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 1.6e-08 65.9 360 23.6
ClCG07G009040 Citrullus lanatus HOM05D000891 ORTHO05D000761 2.1e-08 65.5 235 24.7
Aqoxy1G02476 Aquilegia oxysepala HOM05D000300 ORTHO05D000383 3.5e-08 64.7 263 27.4
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 4.6e-08 64.3 175 24.0
RcHm_v2.0_Chr3g0448241 Rosa chinensis HOM05D000001 ORTHO05D000003 4.6e-08 64.3 229 22.7
arahy.Tifrunner.gnm1.ann1.CUF5YV Arachis hypogaea HOM05D002479 ORTHO05D002675 2.3e-07 62.0 378 22.5
Nitab4.5_0004523g0010 Nicotiana tabacum HOM05D000300 ORTHO05D000383 3.0e-07 61.6 232 24.1
MD17G1234700 Malus domestica HOM05D007173 ORTHO05D009151 5.1e-07 60.8 187 24.6
Phvul.009G219100 Phaseolus vulgaris HOM05D001779 ORTHO05D001753 5.1e-07 60.8 335 20.9
MD03G1167900 Malus domestica HOM05D000001 ORTHO05D000003 6.6e-07 60.5 229 22.7
unitig_750.g28409 Utricularia gibba HOM05D000976 ORTHO05D000383 6.6e-07 60.5 168 26.8
Cc01_g05550 Coffea canephora HOM05D000001 ORTHO05D000003 8.6e-07 60.1 230 23.9
Prupe.4G268300 Prunus persica HOM05D000001 ORTHO05D000003 1.1e-06 59.7 230 23.9
ECA248G1627 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.5e-06 59.3 351 21.1
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 1.9e-06 58.9 215 25.6
GSVIVG01015233001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.3e-06 58.2 228 24.1
Actinidia16370 Actinidia chinensis HOM05D000001 ORTHO05D000003 4.3e-06 57.8 281 23.1
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 4.3e-06 57.8 130 26.9
QL06p048956 Quercus lobata HOM05D000001 ORTHO05D000003 4.3e-06 57.8 281 22.8
HPP92_013955 Vanilla planifolia HOM05D000001 ORTHO05D000003 5.6e-06 57.4 314 22.3
AL6G40060 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 7.3e-06 57.0 236 22.9
AT5G27110 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 7.3e-06 57.0 363 21.8
AagrBONN_evm.TU.Sc2ySwM_368.2333 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.5e-06 56.6 243 23.0
CANSAT80G1279 Cannabis sativa HOM05D002649 ORTHO05D002838 9.5e-06 56.6 246 19.1
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 9.5e-06 56.6 130 25.4
Nitab4.5_0019709g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000003 9.5e-06 56.6 221 23.5


User provided reference genes

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