Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 3.2e-309 1064.3 553 100.0
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 8.0e-119 431.8 478 54.4
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.7e-116 424.1 537 50.5
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.9e-113 413.3 542 48.5
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 2.5e-112 410.2 542 49.8
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.7e-111 406.8 550 47.6
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 5.7e-109 399.1 544 47.6
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 8.3e-108 395.2 543 47.1
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 1.8e-107 394.0 540 46.5
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 7.0e-107 392.1 540 47.0
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.0e-106 390.6 539 47.3
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 4.5e-106 389.4 538 47.4
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 5.9e-106 389.0 541 46.8
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 2.9e-105 386.7 544 47.2
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 5.0e-105 386.0 543 47.0
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.1e-104 384.8 544 46.1
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 5.5e-104 382.5 537 46.9
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.6e-103 380.9 553 45.8
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 2.7e-103 380.2 541 46.4
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 6.1e-103 379.0 546 46.7
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.0e-102 378.3 539 47.1
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 5.2e-102 375.9 559 45.3
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 2.0e-101 374.0 552 46.0
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 2.6e-101 373.6 544 45.0
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 4.4e-101 372.9 544 45.6
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 5.7e-101 372.5 539 44.5
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 6.3e-100 369.0 543 44.8
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 6.3e-100 369.0 541 44.4
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 8.3e-100 368.6 531 46.5
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.4e-99 367.9 531 46.7
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 9.2e-99 365.2 490 49.0
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 2.0e-98 364.0 541 45.1
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 4.5e-98 362.8 542 44.5
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 2.3e-97 360.5 541 43.8
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 5.0e-97 359.4 546 45.4
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.9e-96 357.5 556 44.2
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 7.3e-96 355.5 551 44.5
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.2e-95 354.8 539 46.4
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.8e-95 353.6 535 43.7
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 3.6e-95 353.2 542 43.7
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 4.7e-95 352.8 536 45.5
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.4e-94 351.3 542 45.2
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 3.0e-94 350.1 566 42.4
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.2e-93 348.2 594 41.1
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 2.6e-93 347.1 540 45.6
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 3.4e-93 346.7 540 42.2
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 9.8e-93 345.1 583 41.3
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 3.7e-92 343.2 545 41.8
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.9e-92 342.8 585 42.2
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 6.4e-92 342.4 560 42.7
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 2.4e-91 340.5 536 44.4
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 7.0e-91 339.0 541 44.2
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 7.0e-91 339.0 551 43.6
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 9.2e-91 338.6 561 43.1
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 9.2e-91 338.6 542 42.1
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 1.2e-90 338.2 545 42.9
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 3.5e-90 336.7 530 44.5
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 7.8e-90 335.5 553 43.0
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 3.9e-89 333.2 506 45.7
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 6.6e-89 332.4 551 42.3
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.1e-88 331.6 555 42.5
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 1.5e-88 331.3 505 45.5
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.6e-88 329.3 551 41.7
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 7.3e-88 328.9 558 41.6
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.6e-87 327.8 542 41.7
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.7e-87 326.2 528 43.0
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.8e-86 324.3 551 42.3
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 2.3e-86 323.9 541 42.1
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 5.2e-86 322.8 543 41.1
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-85 321.6 559 41.3
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.5e-85 321.2 551 41.4
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 4.4e-85 319.7 367 50.1
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.8e-85 319.3 578 40.5
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 9.8e-85 318.5 545 42.0
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 2.2e-84 317.4 549 41.7
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 8.3e-84 315.5 514 42.2
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.1e-83 315.1 489 45.4
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 1.4e-83 314.7 511 42.5
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 4.1e-83 313.2 543 41.1
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 5.4e-83 312.8 542 40.6
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 1.6e-82 311.2 532 42.5
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 3.5e-82 310.1 563 41.2
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 4.6e-82 309.7 512 43.2
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 6.0e-82 309.3 545 40.7
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 6.0e-82 309.3 540 42.2
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.7e-81 307.8 540 41.3
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.7e-81 307.8 572 39.0
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 2.3e-81 307.4 568 40.1
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 5.0e-81 306.2 536 41.0
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 5.0e-81 306.2 561 41.0
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 1.9e-80 304.3 507 41.6
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 2.5e-80 303.9 574 39.9
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 4.3e-80 303.1 535 41.7
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 9.5e-80 302.0 543 41.3
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 8.1e-79 298.9 544 40.3
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 3.1e-78 297.0 560 40.5
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 1.5e-77 294.7 547 40.6
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 1.5e-77 294.7 547 40.6
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 2.0e-77 294.3 545 40.6
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 2.2e-76 290.8 544 39.7
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.4e-75 288.1 541 39.4
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.9e-75 287.7 544 39.9
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 3.2e-75 287.0 542 37.8
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 5.4e-75 286.2 536 40.3
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 7.1e-75 285.8 526 39.9
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.1e-74 284.3 521 40.7
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.6e-73 279.3 507 40.6
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.1e-72 278.5 542 36.9
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.1e-72 278.5 325 49.5
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 2.5e-72 277.3 550 39.1
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 3.3e-72 276.9 552 38.4
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 4.3e-72 276.6 535 39.3
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 7.3e-72 275.8 550 38.0
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 1.6e-71 274.6 468 44.7
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.6e-71 274.6 550 39.1
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 6.2e-71 272.7 553 38.0
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 8.1e-71 272.3 521 38.8
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 8.1e-71 272.3 529 38.6
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.5e-69 268.1 322 48.4
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 6.4e-68 262.7 533 38.6
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 2.1e-66 257.7 499 40.3
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.0e-66 256.1 560 36.6
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.0e-65 255.4 540 37.2
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.3e-65 255.0 466 40.1
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 3.9e-65 253.4 540 38.0
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 8.6e-65 252.3 543 38.1
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 2.5e-64 250.8 546 37.2
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.1e-63 247.7 541 37.0
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.6e-63 246.9 414 43.2
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 3.6e-63 246.9 541 37.0
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.7e-63 246.5 532 37.4
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.2e-63 246.1 534 37.3
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 1.3e-60 238.4 409 44.7
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 6.6e-57 226.1 535 34.2
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.5e-53 214.9 365 37.3
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 3.8e-52 210.3 365 45.2
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.1e-51 208.8 509 34.8
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 1.4e-51 208.4 431 39.0
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 3.5e-50 203.8 195 52.8
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 3.9e-49 200.3 330 45.2
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.5e-45 188.3 307 39.1
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.3e-41 174.5 242 47.5
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 4.3e-40 170.2 359 39.6
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 6.9e-38 162.9 308 38.3
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 2.5e-35 154.5 366 39.1
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.4e-30 137.9 302 40.4
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.0e-28 132.5 503 29.0
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-28 131.0 244 39.3
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.3e-25 121.3 97 56.7
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.5e-24 118.6 167 49.7
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 4.6e-18 97.1 270 33.7
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.3e-16 90.9 175 41.1
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.2e-13 82.4 240 35.0
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.6e-13 81.3 224 34.8
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 4.5e-13 80.5 118 47.5
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 7.2e-11 73.2 93 44.1
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 6.1e-10 70.1 109 44.0
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.6e-08 64.7 197 33.0
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 7.4e-08 63.2 102 46.1
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.2e-07 59.7 234 29.1
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 5.3e-06 57.0 54 48.1


User provided reference genes

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