Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 0.0e+00 1570.4 784 100.0
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 0.0e+00 1186.4 777 76.7
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 5.6e-243 844.7 752 55.9
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 3.7e-239 832.0 772 54.9
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 1.4e-238 830.1 685 57.8
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 1.9e-238 829.7 743 56.4
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 1.7e-236 823.2 694 57.3
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 4.3e-235 818.5 737 55.6
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 9.5e-235 817.4 741 55.6
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 1.8e-233 813.1 750 53.6
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 1.2e-232 810.4 779 53.3
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 2.6e-232 809.3 722 55.7
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 5.8e-232 808.1 702 56.7
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 7.6e-232 807.7 724 55.2
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 9.9e-232 807.4 733 54.3
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 2.9e-231 805.8 748 54.3
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 6.4e-231 804.7 750 52.7
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 1.9e-230 803.1 656 58.4
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 1.9e-230 803.1 670 57.3
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 3.2e-230 802.4 742 53.4
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 3.2e-230 802.4 741 54.4
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 5.4e-230 801.6 678 57.2
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 5.4e-230 801.6 655 57.4
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 2.7e-229 799.3 690 57.4
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 6.0e-229 798.1 716 54.7
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 7.8e-229 797.7 655 56.9
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 2.3e-228 796.2 698 55.2
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 8.7e-228 794.3 717 55.0
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 8.7e-228 794.3 777 52.9
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 1.9e-227 793.1 735 54.1
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 2.5e-227 792.7 702 55.0
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 9.6e-227 790.8 686 54.8
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 3.6e-226 788.9 714 55.2
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.6e-226 788.9 716 54.1
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 1.1e-225 787.3 713 54.0
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 1.8e-225 786.6 729 53.8
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 1.8e-225 786.6 746 53.8
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.0e-225 785.4 794 51.5
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 4.0e-225 785.4 762 52.9
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.8e-224 781.6 668 57.2
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.3e-223 780.4 756 51.6
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 2.9e-223 779.2 680 55.6
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 1.1e-222 777.3 700 53.7
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 2.4e-222 776.2 755 51.7
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 2.4e-222 776.2 685 55.3
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 1.3e-220 770.4 758 50.7
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 5.1e-220 768.5 761 52.4
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 5.1e-220 768.5 773 51.7
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 5.1e-220 768.5 752 52.0
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 6.6e-220 768.1 757 51.3
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 1.9e-219 766.5 729 52.5
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 7.3e-219 764.6 655 54.4
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 1.6e-218 763.5 758 51.7
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 1.6e-218 763.5 735 53.1
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 1.6e-218 763.5 759 51.3
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 6.2e-218 761.5 671 53.5
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 4.0e-217 758.8 677 54.2
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 4.0e-217 758.8 677 53.6
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 6.9e-217 758.1 753 51.8
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 6.9e-217 758.1 674 54.0
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 2.6e-216 756.1 743 51.1
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 1.3e-215 753.8 695 52.4
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 4.9e-215 751.9 693 52.7
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 1.4e-214 750.4 654 53.5
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 1.4e-214 750.4 654 53.5
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 1.4e-214 750.4 654 53.5
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 1.9e-214 750.0 723 51.7
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 1.2e-213 747.3 717 54.0
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 2.7e-213 746.1 734 51.5
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 4.6e-213 745.3 671 52.5
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 1.0e-212 744.2 735 52.0
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 1.8e-212 743.4 704 52.4
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 8.7e-212 741.1 732 51.4
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 2.5e-211 739.6 654 52.9
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 4.3e-211 738.8 693 53.0
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 4.3e-211 738.8 690 52.5
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 5.3e-209 731.9 719 51.3
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 9.0e-209 731.1 691 51.5
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.2e-208 730.7 722 51.4
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 5.8e-208 728.4 688 52.3
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 1.0e-207 727.6 734 49.5
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 4.9e-207 725.3 714 51.3
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 4.9e-207 725.3 728 50.1
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 1.4e-206 723.8 769 49.3
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 1.3e-202 710.7 764 48.3
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 3.1e-201 706.1 746 49.9
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 5.8e-200 701.8 730 48.1
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.0e-196 691.0 767 47.2
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 5.1e-196 688.7 621 53.1
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 1.4e-193 680.6 643 53.8
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 2.4e-193 679.9 621 52.8
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 5.9e-192 675.2 686 48.5
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.3e-188 663.3 626 53.0
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 6.9e-185 651.7 670 50.0
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 1.5e-171 607.4 619 50.1
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.7e-170 604.0 560 53.8
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 6.8e-164 582.0 648 46.3
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 1.8e-161 573.9 657 43.2
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 7.2e-158 562.0 765 42.0
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 5.0e-151 539.3 523 52.4
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 2.8e-133 480.3 706 40.4
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 6.0e-128 462.6 407 55.5
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 9.6e-110 402.1 466 44.4
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 9.3e-105 385.6 497 42.1
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.5e-97 359.8 394 49.7
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 5.6e-94 349.7 716 32.5
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 3.4e-91 340.5 343 50.1
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 7.9e-88 329.3 494 40.7
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.4e-84 317.8 356 51.1
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 9.7e-78 295.8 285 50.5
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 6.5e-74 283.1 301 49.5
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 4.2e-73 280.4 654 29.1
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 5.7e-70 270.0 682 27.7
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 5.9e-59 233.4 654 25.5
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 7.0e-52 209.9 690 24.6
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.4e-44 185.7 215 48.4
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 4.7e-40 170.6 166 56.0
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 4.7e-40 170.6 673 23.5
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 8.6e-34 149.8 179 46.9
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 9.8e-22 109.8 181 37.0
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 1.9e-20 105.5 70 65.7
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 7.8e-19 100.1 688 19.8
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 2.6e-14 85.1 77 53.2
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 3.2e-12 78.2 61 54.1
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 2.7e-11 75.1 633 18.8
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 7.8e-11 73.6 53 58.5
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 8.6e-10 70.1 55 58.2
Eucgr.C02463 Eucalyptus grandis HOM05D005973 ORTHO05D007285 1.9e-09 68.9 441 21.5
vmacro11775 Vaccinium macrocarpon HOM05D000001 ORTHO05D009952 6.2e-08 63.9 360 18.6
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 1.4e-07 62.8 231 22.9
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 1.8e-07 62.4 196 26.5
AagrBONN_evm.TU.Sc2ySwM_369.598 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.1e-07 61.6 332 21.7
Rhsim13G0150900 Rhododendron simsii HOM05D000001 ORTHO05D009952 1.2e-06 59.7 353 19.5
PGSC0003DMG402028685 Solanum tuberosum HOM05D000001 ORTHO05D000003 2.0e-06 58.9 330 22.1
MD05G1044700 Malus domestica HOM05D000001 ORTHO05D000003 2.6e-06 58.5 315 23.2
Duzib160G0140 Durio zibethinus HOM05D000001 ORTHO05D000003 9.9e-06 56.6 254 22.8


User provided reference genes

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