Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb004240 Zea mays HOM05D006329 ORTHO05D008357 1.1e-223 779.6 407 100.0
Os03g0152700 Oryza sativa ssp. japonica HOM05D006329 ORTHO05D008357 9.9e-143 510.8 340 78.8
MBI18_g02633_MAGBIO Magnolia biondii HOM05D006329 ORTHO05D008357 6.5e-126 454.9 389 62.7
Gohir.A10G203300 Gossypium hirsutum HOM05D006329 ORTHO05D008357 2.5e-125 453.0 418 59.6
Gohir.D10G211400 Gossypium hirsutum HOM05D006329 ORTHO05D008357 9.3e-125 451.1 418 59.6
Gorai.011G237100 Gossypium raimondii HOM05D006329 ORTHO05D008357 9.3e-125 451.1 418 59.6
Glyma.10G207800 Glycine max HOM05D006329 ORTHO05D008357 1.8e-123 446.8 407 58.7
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 2.3e-123 446.4 404 60.6
Cc02_g10940 Coffea canephora HOM05D006329 ORTHO05D008357 3.3e-122 442.6 425 57.4
COL.COLO4_17136 Corchorus olitorius HOM05D006329 ORTHO05D008357 7.4e-122 441.4 390 60.3
BcaB02g09141 Brassica carinata HOM05D006329 ORTHO05D008357 2.4e-120 436.4 379 62.3
Potri.008G035500 Populus trichocarpa HOM05D006329 ORTHO05D008357 2.4e-120 436.4 418 57.9
TAR623G1379 Trochodendron aralioides HOM05D006329 ORTHO05D008357 2.4e-120 436.4 430 56.5
Aqoxy1G01144 Aquilegia oxysepala HOM05D006329 ORTHO05D008357 5.3e-120 435.3 422 55.2
Thecc.10G083200 Theobroma cacao HOM05D006329 ORTHO05D008357 5.3e-120 435.3 420 58.3
Sabra08G0023700 Salix brachista HOM05D006329 ORTHO05D008357 9.0e-120 434.5 389 60.2
CARHR133910 Cardamine hirsuta HOM05D006329 ORTHO05D008357 1.5e-119 433.7 388 61.1
Thhalv10016747m.g Eutrema salsugineum HOM05D006329 ORTHO05D008357 2.6e-119 433.0 410 57.3
CDE03G0204 Ceratophyllum demersum HOM05D006329 ORTHO05D008357 5.9e-119 431.8 386 59.6
Actinidia34805 Actinidia chinensis HOM05D006329 ORTHO05D008357 7.7e-119 431.4 408 58.3
MD07G1170000 Malus domestica HOM05D006329 ORTHO05D008357 7.7e-119 431.4 410 58.3
THA.LOC104824234 Tarenaya hassleriana HOM05D006329 ORTHO05D008357 1.7e-118 430.3 375 62.4
Sp4g21490 Schrenkiella parvula HOM05D006329 ORTHO05D008357 2.9e-118 429.5 386 60.4
Duzib114G0755 Durio zibethinus HOM05D006329 ORTHO05D008357 3.8e-118 429.1 426 56.6
Phvul.007G098900 Phaseolus vulgaris HOM05D006329 ORTHO05D008357 3.8e-118 429.1 416 55.5
PGR142G3823 Punica granatum HOM05D006329 ORTHO05D008357 3.8e-118 429.1 420 56.7
Sed0004104 Sechium edule HOM05D006329 ORTHO05D008357 3.8e-118 429.1 423 55.6
AL4G36440 Arabidopsis lyrata HOM05D006329 ORTHO05D008357 6.5e-118 428.3 392 59.9
Medtr1g094190 Medicago truncatula HOM05D006329 ORTHO05D008357 1.1e-117 427.6 344 62.5
Nitab4.5_0001659g0150 Nicotiana tabacum HOM05D006329 ORTHO05D008357 1.1e-117 427.6 419 55.4
Nn6g35280 Nelumbo nucifera HOM05D006329 ORTHO05D008357 1.4e-117 427.2 415 56.1
Nitab4.5_0001450g0040 Nicotiana tabacum HOM05D006329 ORTHO05D008357 1.4e-117 427.2 419 55.8
AT2G39140 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 3.2e-117 426.0 391 59.6
PGSC0003DMG400007434 Solanum tuberosum HOM05D006329 ORTHO05D008357 9.4e-117 424.5 429 56.4
Manes.05G201000 Manihot esculenta HOM05D006329 ORTHO05D008357 2.1e-116 423.3 419 57.3
CANSAT56G2601 Cannabis sativa HOM05D006329 ORTHO05D008357 4.6e-116 422.2 350 62.3
Ciclev10031516m.g Citrus clementina HOM05D006329 ORTHO05D008357 4.6e-116 422.2 375 59.7
Carub.0004s2119 Capsella rubella HOM05D006329 ORTHO05D008357 1.0e-115 421.0 385 59.7
PSO339G5012 Papaver somniferum HOM05D006329 ORTHO05D008357 1.0e-115 421.0 393 57.0
RcHm_v2.0_Chr1g0362601 Rosa chinensis HOM05D006329 ORTHO05D008357 1.0e-115 421.0 381 59.1
Solyc11g008360.3 Solanum lycopersicum HOM05D006329 ORTHO05D008357 1.0e-115 421.0 395 58.7
TPR.G10288 Trifolium pratense HOM05D006329 ORTHO05D008357 1.4e-115 420.6 414 55.3
PSO063G6532 Papaver somniferum HOM05D006329 ORTHO05D008357 1.8e-115 420.2 393 56.5
Psat6g180040 Pisum sativum HOM05D006329 ORTHO05D008357 1.8e-115 420.2 343 60.9
SalBow6G7241 Salvia bowleyana HOM05D006329 ORTHO05D008357 3.9e-115 419.1 416 56.0
QL08p054507 Quercus lobata HOM05D006329 ORTHO05D008357 6.7e-115 418.3 417 55.9
FAN06G3910 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.5e-114 417.2 374 58.6
CiPaw.01G268700 Carya illinoinensis HOM05D006329 ORTHO05D008357 2.0e-114 416.8 347 62.5
Ca_10544_v3 Cicer arietinum L. HOM05D006329 ORTHO05D008357 2.0e-114 416.8 345 60.3
BraA05t19681Z Brassica rapa HOM05D006329 ORTHO05D008357 2.5e-114 416.4 387 59.7
Eucgr.G02867 Eucalyptus grandis HOM05D006329 ORTHO05D008357 3.3e-114 416.0 343 63.3
Prupe.2G208900 Prunus persica HOM05D006329 ORTHO05D008357 3.3e-114 416.0 354 61.3
A05p07160 Brassica napus HOM05D006329 ORTHO05D008357 4.3e-114 415.6 387 59.2
FAN10G3782 Fragaria x ananassa HOM05D006329 ORTHO05D008357 4.3e-114 415.6 408 56.1
arahy.Tifrunner.gnm1.ann1.KFTR8M Arachis hypogaea HOM05D006329 ORTHO05D008357 5.7e-114 415.2 425 55.5
CsaV3_6G036680 Cucumis sativus L. HOM05D006329 ORTHO05D008357 7.4e-114 414.8 343 63.0
Hma1.2p1_2894F.1_g329960 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 7.4e-114 414.8 419 55.4
MSTRG.389 Avicennia marina HOM05D006329 ORTHO05D008357 9.7e-114 414.5 419 55.8
FvH4_7g18810 Fragaria vesca HOM05D006329 ORTHO05D008357 9.7e-114 414.5 409 56.0
QL08p054383 Quercus lobata HOM05D006329 ORTHO05D008357 9.7e-114 414.5 417 55.6
Migut.F01702 Erythranthe guttata HOM05D006329 ORTHO05D008357 1.7e-113 413.7 415 55.7
MELO3C019822.2 Cucumis melo HOM05D006329 ORTHO05D008357 2.2e-113 413.3 343 62.7
Lj5g0015116 Lotus japonicus HOM05D006329 ORTHO05D008357 2.2e-113 413.3 347 61.7
Oeu013841.1 Olea europaea HOM05D006329 ORTHO05D008357 3.1e-112 409.5 408 57.4
HPP92_026018 Vanilla planifolia HOM05D006329 ORTHO05D008357 3.1e-112 409.5 370 58.9
FAN10G0068 Fragaria x ananassa HOM05D006329 ORTHO05D008357 4.1e-112 409.1 372 58.1
HanXRQChr14g0456591 Helianthus annuus HOM05D006329 ORTHO05D008357 6.9e-112 408.3 270 73.3
GSVIVG01016221001 Vitis vinifera HOM05D006329 ORTHO05D008357 3.4e-111 406.0 272 73.2
SGA_v2.0_scaffold51G18714 Striga asiatica HOM05D006329 ORTHO05D008357 4.5e-111 405.6 408 57.1
Lsat_1_v5_gn_2_113040 Lactuca sativa HOM05D006329 ORTHO05D008357 1.0e-110 404.4 270 72.6
HPP92_027741 Vanilla planifolia HOM05D006329 ORTHO05D008357 1.3e-110 404.1 326 64.4
BolC4t22452H Brassica oleracea HOM05D006329 ORTHO05D008357 1.9e-109 400.2 343 62.1
Sopen11g004170 Solanum pennellii HOM05D006329 ORTHO05D008357 1.9e-109 400.2 280 72.1
BcaC02g12042 Brassica carinata HOM05D006329 ORTHO05D008357 2.5e-109 399.8 343 62.1
C04p08570 Brassica napus HOM05D006329 ORTHO05D008357 2.5e-109 399.8 343 62.1
Lalb_Chr21g0313671 Lupinus albus HOM05D006329 ORTHO05D008357 2.5e-109 399.8 353 57.2
Haze_16856 Corylus avellana HOM05D006329 ORTHO05D008357 3.2e-109 399.4 364 58.2
Rhsim09G0148200 Rhododendron simsii HOM05D000461 ORTHO05D001829 9.4e-109 397.9 419 54.4
ClCG08G007690 Citrullus lanatus HOM05D006329 ORTHO05D008357 3.6e-108 396.0 328 63.4
ATR0219G015 Amborella trichopoda HOM05D006329 ORTHO05D008357 5.1e-107 392.1 373 57.1
FAN06G0494 Fragaria x ananassa HOM05D006329 ORTHO05D008357 2.6e-106 389.8 380 56.6
EL10Ac6g14260 Beta vulgaris HOM05D006329 ORTHO05D008357 5.7e-106 388.7 323 61.6
arahy.Tifrunner.gnm1.ann1.21BGD2 Arachis hypogaea HOM05D006329 ORTHO05D008357 7.4e-106 388.3 420 53.8
Peaxi162Scf00145g01311 Petunia axillaris HOM05D006329 ORTHO05D008357 9.7e-106 387.9 387 56.3
Cpa.g.sc53.128 Carica papaya HOM05D006329 ORTHO05D008357 3.7e-105 386.0 347 59.4
Ah.02g128110 Amaranthus hybridus HOM05D006329 ORTHO05D008357 4.8e-105 385.6 353 57.2
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.1e-104 384.4 269 70.3
ECA238G1295 Erigeron canadensis HOM05D006329 ORTHO05D001676 9.1e-104 381.3 255 73.3
CAN.G321.64 Capsicum annuum HOM05D006329 ORTHO05D008357 5.0e-102 375.6 251 74.5
EL10Ac4g09587 Beta vulgaris HOM05D006329 ORTHO05D008357 1.6e-100 370.5 298 62.4
Cfa001679 Carpinus fangiana HOM05D006329 ORTHO05D008357 8.0e-100 368.2 258 69.0
VMungo0251G3605 Vigna mungo HOM05D006329 ORTHO05D008357 2.8e-97 359.8 334 56.0
DCAR_005490 Daucus carota HOM05D006329 ORTHO05D008357 4.1e-96 355.9 392 51.5
Mapoly0002s0007 Marchantia polymorpha HOM05D006329 ORTHO05D008357 5.0e-94 349.0 276 64.1
vmacro04842 Vaccinium macrocarpon HOM05D006329 ORTHO05D008357 1.5e-93 347.4 417 49.9
Hund20700 Selenicereus undatus HOM05D006329 ORTHO05D008357 4.7e-92 342.4 480 44.4
CSS0005771 Camellia sinensis var. sinensis HOM05D006329 ORTHO05D008357 8.8e-91 338.2 418 48.8
RhsimUnG0185600 Rhododendron simsii HOM05D000461 ORTHO05D001829 2.0e-90 337.0 386 52.1
AUR62002759 Chenopodium quinoa HOM05D006329 ORTHO05D008357 2.6e-90 336.7 237 71.3
Dinv31231 Davidia involucrata HOM05D006329 ORTHO05D008357 2.8e-89 333.2 341 54.8
Lj3A938T44 Lonicera japonica HOM05D006329 ORTHO05D008357 1.9e-85 320.5 401 49.4
Lalb_Chr21g0313541 Lupinus albus HOM05D006329 ORTHO05D008357 1.4e-83 314.3 210 70.5
Pp3c7_13640 Physcomitrium patens HOM05D006329 ORTHO05D008357 2.7e-79 300.1 267 56.9
SMO329G0071 Selaginella moellendorffii HOM05D006329 ORTHO05D008357 4.5e-79 299.3 252 60.3
Aa31LG5G20460 Aethionema arabicum HOM05D006329 ORTHO05D008357 8.9e-75 285.0 344 49.4
Cfa001678 Carpinus fangiana HOM05D006329 ORTHO05D008357 2.9e-70 270.0 243 59.7
HPP92_026744 Vanilla planifolia HOM05D006329 ORTHO05D008357 2.2e-65 253.8 257 53.7
Sc09g0006060 Simmondsia chinensis HOM05D006329 ORTHO05D008357 5.4e-64 249.2 178 70.8
FAN01G2166 Fragaria x ananassa HOM05D006329 ORTHO05D008357 7.8e-63 245.4 211 62.1
MCO14G528 Micromonas commoda HOM05D006329 ORTHO05D008357 1.6e-52 211.1 256 45.7
CBR_g29624 Chara braunii HOM05D006329 ORTHO05D008357 1.4e-51 208.0 195 57.4
PRCOL_00004574 Prasinoderma coloniale HOM05D006329 ORTHO05D008357 1.2e-44 184.9 251 41.0
Cre02.g095121 Chlamydomonas reinhardtii HOM05D006329 ORTHO05D008357 2.8e-44 183.7 321 38.9
AUR62014125 Chenopodium quinoa HOM05D006329 ORTHO05D008357 1.9e-40 171.0 116 75.0
Pp3s196_90 Physcomitrium patens HOM05D006329 ORTHO05D008357 1.9e-24 117.9 252 30.6
CAN.G176.13 Capsicum annuum HOM05D006329 ORTHO05D033978 7.1e-24 115.9 83 65.1
Hma1.2p1_2894F.1_g329970 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 4.3e-21 106.7 78 66.7
AT3G43340 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 1.4e-19 101.7 74 66.2
Cre07.g323550 Chlamydomonas reinhardtii HOM05D006329 ORTHO05D008357 1.6e-15 88.2 258 27.5
Hma1.2p1_2894F.1_g329973 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 5.1e-14 83.2 53 71.7
MCO04G216 Micromonas commoda HOM05D006329 ORTHO05D008357 1.3e-12 78.6 236 27.5
MCO01G641 Micromonas commoda HOM05D006329 ORTHO05D008357 2.1e-12 77.8 236 26.3
Glyma.20G182966 Glycine max HOM05D006329 ORTHO05D028485 4.1e-11 73.6 88 43.2
PRCOL_00006422 Prasinoderma coloniale HOM05D006329 ORTHO05D008357 3.8e-09 67.0 197 28.4
CAN.G184.4 Capsicum annuum HOM05D006329 ORTHO05D028485 3.5e-07 60.5 70 47.1
Lalb_Chr21g0313531 Lupinus albus HOM05D006329 ORTHO05D008357 8.7e-06 55.8 110 34.5


User provided reference genes

Program Settings