Gene: Solyc11g008360.3

General Information

Structural Information

Species Solanum lycopersicum
Gene Identifier Solyc11g008360.3
Transcript Identifier Solyc11g008360.3.1
Gene Type Coding gene
Location SL4.0ch11 : 2603611-2608511 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D006329
#Genes/#Species 126/93
Phylogenetic origin

ID ORTHO05D008357
#Genes/#Species 120/93
Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

tid Solyc11g008360.3.1
uniprot A0A3Q7IQ67
gene_id Solyc11g008360

Descriptions

Short descriptions
Ortholog descriptions

Description Pseudouridine synthase family protein (AHRD V3.3 *** A0A1P8AXV3_ARATH)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0001522	IEA	GOA Database	pseudouridine synthesis
GO:0001522	IEA	InterPro	pseudouridine synthesis
GO:0009451	IEA	GOA Database	RNA modification
GO:0009451	IEA	InterPro	RNA modification
GO:0032544	IBA	GOA Database	plastid translation
GO:0000488	IBA	GOA Database	maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
GO:0000489	IBA	GOA Database	maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003723	IEA	GOA Database	RNA binding
GO:0003723	IEA	InterPro	RNA binding
GO:0009982	IEA	GOA Database	pseudouridine synthase activity
GO:0009982	IEA	InterPro	pseudouridine synthase activity
GO:0016866	IEA	GOA Database	intramolecular transferase activity
GO:0003729	ISO	PLAZA Integrative Orthology	mRNA binding	AT2G39140

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009507	IBA	GOA Database	chloroplast
GO:0009501	ISO	PLAZA Integrative Orthology	amyloplast	AT2G39140
GO:0009536	ISO	PLAZA Integrative Orthology	plastid	AT2G39140

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR002942	RNA-binding S4 domain
IPR020094	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal
IPR006145	Pseudouridine synthase, RsuA/RluA-like
IPR020103	Pseudouridine synthase, catalytic domain superfamily
IPR042092	Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain
IPR036986	RNA-binding S4 domain superfamily

Mapman id	Description
17.1.1.2.2.2	Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.rRNA pseudouridine synthase (RsuA)