Gene: Sopen11g004170

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g004170
  • Transcript Identifier Sopen11g004170.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 2638931-2643409 : negative

Gene Family Information

  • ID HOM05D006329
  • #Genes/#Species 126/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g004170.1

Descriptions

  • Description Suppressor of var2 variegation phenotype. Chloroplast localized. Loss of function mutant has defects in chloroplast protein translation and rRNA processing. Similar in sequence to pseudouridine synthase proteins. | SUPPRESSOR OF VARIEGATION 1 (SVR1) | CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain , Pseudouridine synthase, RsuA and RluB/C/D/E/F , RNA-binding S4 , Pseudouridine synthase, RsuA and RluB/E/F, conserved site | BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001522
IEA
InterPropseudouridine synthesis
GO:0009451
IEA
InterProRNA modification
GO:0000489
ISO
PLAZA Integrative Orthologymaturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) AT2G39140
GO:0000488
ISO
PLAZA Integrative Orthologymaturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) AT2G39140
GO:0032544
ISO
PLAZA Integrative Orthologyplastid translation AT2G39140

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0009982
IEA
InterPropseudouridine synthase activity
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G39140

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT2G39140
GO:0009501
ISO
PLAZA Integrative Orthologyamyloplast AT2G39140
GO:0009536
ISO
PLAZA Integrative Orthologyplastid AT2G39140

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR020094 Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal
IPR002942 RNA-binding S4 domain
IPR036986 RNA-binding S4 domain superfamily
IPR020103 Pseudouridine synthase, catalytic domain superfamily
IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain
IPR006145 Pseudouridine synthase, RsuA/RluA-like
Mapman id Description
17.1.1.2.2.2 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.rRNA pseudouridine synthase (RsuA)