Gene: Nitab4.5_0001659g0150
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0001659g0150
- Transcript Identifier Nitab4.5_0001659g0150.1
- Gene Type Coding gene
- Location Nitab4.5_0001659 : 385543-396735 : positive
Gene Family Information
- ID HOM05D006329
- #Genes/#Species 126/93
- Phylogenetic origin
- ID ORTHO05D008357
- #Genes/#Species 120/93
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Nitab4.5_0001659g0150.1
- SR1-identifier Nta09g03820.1
Descriptions
- Description Pseudouridine synthase, RsuA/RluB/C/D/E/F, RNA-binding S4 domain, Pseudouridine synthase, RsuA/RluB/E/F, conserved site, Pseudouridine synthase, catalytic domain
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0001522 | IEA | InterPro | pseudouridine synthesis | |
| GO:0009451 | IEA | InterPro | RNA modification | |
| GO:0000489 | ISO | PLAZA Integrative Orthology | maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | AT2G39140 |
| GO:0000488 | ISO | PLAZA Integrative Orthology | maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | AT2G39140 |
| GO:0032544 | ISO | PLAZA Integrative Orthology | plastid translation | AT2G39140 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0009982 | IEA | InterPro | pseudouridine synthase activity | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT2G39140 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT2G39140 |
| GO:0009501 | ISO | PLAZA Integrative Orthology | amyloplast | AT2G39140 |
| GO:0009536 | ISO | PLAZA Integrative Orthology | plastid | AT2G39140 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR042092 | Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain |
| IPR036986 | RNA-binding S4 domain superfamily |
| IPR002942 | RNA-binding S4 domain |
| IPR020103 | Pseudouridine synthase, catalytic domain superfamily |
| IPR006145 | Pseudouridine synthase, RsuA/RluA-like |
| IPR020094 | Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal |
| Mapman id | Description |
|---|---|
| 17.1.1.2.2.2 | Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.rRNA pseudouridine synthase (RsuA) |