Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 1.4e-265 919.1 460 100.0
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 2.3e-148 529.6 520 60.2
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 5.7e-147 525.0 520 59.0
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 9.8e-147 524.2 520 58.1
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 9.8e-147 524.2 520 58.1
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 9.8e-147 524.2 520 58.1
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 9.2e-145 517.7 519 57.6
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.6e-144 516.9 520 57.7
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 2.7e-144 516.2 520 57.7
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 2.7e-144 516.2 520 57.7
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 3.5e-144 515.8 520 57.5
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 2.5e-142 509.6 520 56.9
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 9.5e-142 507.7 539 55.7
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 4.7e-141 505.4 539 54.7
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 1.4e-140 503.8 539 55.7
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 2.3e-140 503.1 539 55.5
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 7.5e-139 498.0 533 55.2
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 1.7e-130 470.3 538 53.0
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 4.6e-128 462.2 544 51.3
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 2.5e-126 456.4 545 52.3
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 9.9e-123 444.5 546 49.1
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 4.4e-115 419.1 529 50.3
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 1.3e-114 417.5 544 45.4
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 1.4e-113 414.1 518 47.9
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 1.4e-113 414.1 458 54.8
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 7.1e-113 411.8 544 45.4
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 3.5e-112 409.5 545 44.6
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 4.6e-112 409.1 544 45.4
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 3.0e-111 406.4 547 43.7
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 3.0e-111 406.4 543 44.9
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 5.1e-111 405.6 544 44.3
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 5.1e-111 405.6 544 44.1
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 8.7e-111 404.8 544 44.3
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 1.5e-110 404.1 544 45.2
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 2.5e-110 403.3 547 45.2
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 3.3e-110 402.9 544 44.7
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 5.6e-110 402.1 545 44.8
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 9.6e-110 401.4 549 44.3
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 1.3e-109 401.0 541 44.0
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.6e-109 400.6 544 44.3
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 2.1e-109 400.2 544 44.3
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 3.6e-109 399.4 544 44.7
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 4.8e-109 399.1 544 45.2
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 6.2e-109 398.7 543 45.1
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 6.2e-109 398.7 543 44.0
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 1.1e-108 397.9 549 44.6
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 1.8e-108 397.1 544 43.9
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 1.8e-108 397.1 544 44.7
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 3.1e-108 396.4 549 43.4
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 3.1e-108 396.4 544 45.2
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 5.3e-108 395.6 544 44.7
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 5.3e-108 395.6 544 44.1
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 5.3e-108 395.6 544 44.3
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 6.9e-108 395.2 544 44.1
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 9.0e-108 394.8 546 44.7
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 2.6e-107 393.3 544 44.3
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 3.4e-107 392.9 546 44.5
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 7.6e-107 391.7 547 43.3
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 1.3e-106 391.0 543 42.7
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 1.7e-106 390.6 544 43.6
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 2.9e-106 389.8 543 42.5
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 4.9e-106 389.0 577 43.7
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 1.4e-105 387.5 549 42.8
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 1.9e-105 387.1 518 43.8
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 1.6e-104 384.0 544 44.7
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 2.1e-104 383.6 551 43.9
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 2.1e-104 383.6 543 42.7
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 7.9e-104 381.7 519 42.8
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 1.3e-103 380.9 543 41.4
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 1.8e-103 380.6 518 44.4
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 1.8e-103 380.6 519 43.4
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 6.7e-103 378.6 544 42.6
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 1.5e-102 377.5 566 42.6
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 1.5e-102 377.5 546 42.5
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 1.5e-102 377.5 545 43.1
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 1.9e-102 377.1 550 42.2
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.5e-102 376.7 522 42.5
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 3.3e-102 376.3 547 42.2
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 3.3e-102 376.3 542 42.8
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.3e-101 374.4 522 42.9
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 2.8e-101 373.2 527 44.0
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 8.1e-101 371.7 556 41.0
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 3.1e-100 369.8 604 39.4
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 6.9e-100 368.6 542 39.9
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 2.6e-99 366.7 546 41.6
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 7.6e-99 365.2 566 41.2
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 7.6e-99 365.2 548 41.6
Aqoxy3G02870 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.7e-98 364.0 519 40.3
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 8.4e-98 361.7 536 42.0
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 2.4e-97 360.1 518 42.3
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 3.2e-97 359.8 590 39.2
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 7.1e-97 358.6 553 41.4
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 7.1e-97 358.6 532 41.0
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.1e-96 357.1 548 40.7
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 4.6e-96 355.9 540 41.9
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 4.6e-96 355.9 548 40.5
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 1.8e-95 354.0 511 42.7
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.3e-95 353.6 557 38.8
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 6.7e-95 352.1 547 39.9
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 8.2e-93 345.1 570 38.8
SpUn0831_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.8e-92 344.0 334 59.0
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 6.0e-88 328.9 538 39.4
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 2.3e-87 327.0 511 39.7
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 3.9e-87 326.2 513 40.5
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 3.1e-84 316.6 697 32.9
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 6.5e-82 308.9 540 38.5
Nitab4.5_0010520g0020 Nicotiana tabacum HOM05D003203 ORTHO05D003526 5.5e-81 305.8 507 37.5
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.6e-80 304.3 566 36.4
AL7G46960 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 5.7e-78 295.8 295 56.6
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 9.7e-78 295.0 375 46.1
CDE07G0939 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 5.0e-74 282.7 432 40.0
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 7.2e-73 278.9 499 36.3
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 6.7e-71 272.3 555 33.7
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.4e-68 263.8 534 33.7
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 3.1e-68 263.5 316 47.8
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 4.5e-67 259.6 357 45.1
Actinidia00021 Actinidia chinensis HOM05D003203 ORTHO05D003526 3.8e-66 256.5 304 49.0
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 2.1e-64 250.8 581 31.0
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 7.9e-64 248.8 301 48.2
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.6e-62 243.8 354 42.9
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 5.7e-62 242.7 543 31.3
SHI27629 Sapria himalayana HOM05D003203 ORTHO05D003526 1.1e-60 238.4 344 42.2
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 3.1e-60 236.9 554 30.9
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.0e-59 234.2 466 35.4
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 5.9e-59 232.6 281 49.5
HanXRQChr09g0243461 Helianthus annuus HOM05D003203 ORTHO05D003526 1.0e-55 221.9 412 35.2
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.8e-52 211.1 510 31.8
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 1.8e-52 211.1 181 63.5
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.5e-51 206.8 511 31.5
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 5.9e-51 206.1 155 66.5
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 2.2e-50 204.1 154 69.5
Sp1g06590 Schrenkiella parvula HOM05D003203 ORTHO05D003526 8.5e-50 202.2 161 68.3
BcaC07g41967 Brassica carinata HOM05D003203 ORTHO05D003526 1.1e-49 201.8 281 47.0
SpUn0840_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 3.2e-49 200.3 134 78.4
Sp3g30710 Schrenkiella parvula HOM05D003203 ORTHO05D003526 9.8e-46 188.7 126 80.2
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 1.3e-45 188.3 544 27.0
HPP92_010182 Vanilla planifolia HOM05D003203 ORTHO05D003526 4.1e-44 183.3 153 60.8
HPP92_010123 Vanilla planifolia HOM05D002295 ORTHO05D002789 2.7e-43 180.6 287 36.2
Cpa.g.sc139.68 Carica papaya HOM05D003203 ORTHO05D003526 1.5e-41 174.9 269 38.7
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 1.2e-40 171.8 183 54.6
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 1.2e-40 171.8 183 54.6
CARHR204760 Cardamine hirsuta HOM05D003203 ORTHO05D003526 1.0e-39 168.7 156 62.2
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 1.8e-39 167.9 147 58.5
PGSC0003DMG400027376 Solanum tuberosum HOM05D003203 ORTHO05D003526 3.7e-37 160.2 261 35.2
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.5e-35 153.7 192 45.3
Nitab4.5_0001802g0120 Nicotiana tabacum HOM05D003203 ORTHO05D003526 3.8e-34 150.2 211 40.3
CAN.G352.39 Capsicum annuum HOM05D003203 ORTHO05D003526 5.0e-34 149.8 213 39.0
AagrBONN_evm.TU.Sc2ySwM_245.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 6.6e-34 149.4 188 45.2
AagrBONN_evm.TU.Sc2ySwM_246.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 6.6e-34 149.4 188 45.2
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 6.6e-34 149.4 188 45.2
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 8.6e-34 149.1 188 44.7
Hma1.2p1_0559F.1_g178620 Hydrangea macrophylla HOM05D003203 ORTHO05D003526 2.6e-30 137.5 132 56.1
SHI27633 Sapria himalayana HOM05D003203 ORTHO05D003526 9.8e-30 135.6 159 47.2
Actinidia15612 Actinidia chinensis HOM05D003203 ORTHO05D003526 3.7e-29 133.7 141 46.8
Lj2A1035T51 Lonicera japonica HOM05D003203 ORTHO05D003526 6.4e-29 132.9 135 51.1
COL.COLO4_32909 Corchorus olitorius HOM05D003203 ORTHO05D003526 4.1e-28 130.2 115 57.4
FAN21G1129 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.5e-27 127.1 135 47.4
PSO339G3960 Papaver somniferum HOM05D003203 ORTHO05D003526 4.6e-27 126.7 158 43.7
PSO765G0134 Papaver somniferum HOM05D003203 ORTHO05D003526 7.8e-27 125.9 132 50.0
FAN17G1794 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.9e-26 123.6 135 46.7
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 8.0e-24 115.9 113 59.3
Lj2A1035T52 Lonicera japonica HOM05D003203 ORTHO05D003526 1.1e-23 115.5 112 54.5
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 2.3e-23 114.4 114 54.4
TWI75G1314 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 3.2e-20 104.0 139 44.6
Ah.01g014960 Amaranthus hybridus HOM05D003203 ORTHO05D003526 4.6e-19 100.1 107 49.5
vmacro14466 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.3e-18 98.6 113 49.6
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 3.9e-18 97.1 117 45.3
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 6.6e-18 96.3 141 39.0
DCAR_024904 Daucus carota HOM05D003203 ORTHO05D003526 1.5e-17 95.1 117 46.2
Lj3g0013082 Lotus japonicus HOM05D003203 ORTHO05D003526 1.5e-17 95.1 104 50.0
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 1.5e-17 95.1 142 40.1
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 2.5e-17 94.4 135 40.7
MD03G1112400 Malus domestica HOM05D003203 ORTHO05D003526 3.3e-17 94.0 117 45.3
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 4.3e-17 93.6 143 38.5
AagrBONN_evm.TU.Sc2ySwM_117.4032 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.6e-14 84.3 157 34.4
Dinv24673 Davidia involucrata HOM05D003203 ORTHO05D003526 3.7e-13 80.5 95 48.4
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 1.9e-12 78.2 124 38.7
Gohir.A07G142600 Gossypium hirsutum HOM05D003203 ORTHO05D003526 3.0e-10 70.9 102 42.2
Peaxi162Scf00389g00943 Petunia axillaris HOM05D003203 ORTHO05D003526 9.5e-09 65.9 46 63.0
vmacro14070 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.2e-08 65.5 162 31.5
Dinv24671 Davidia involucrata HOM05D003203 ORTHO05D003526 8.9e-07 59.3 113 34.5
Zm00001eb134270 Zea mays HOM05D003203 ORTHO05D003526 1.2e-06 58.9 43 62.8


User provided reference genes

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