Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 8.1e-205 716.8 360 100.0
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 2.6e-171 605.5 385 80.8
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 3.6e-152 542.0 361 77.6
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 9.7e-150 533.9 388 72.4
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 6.3e-141 504.6 385 69.9
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 8.5e-130 467.6 363 66.1
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 7.2e-129 464.5 387 64.1
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 2.2e-125 453.0 361 66.2
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 5.5e-121 438.3 361 64.3
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 4.0e-119 432.2 361 63.4
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 4.0e-119 432.2 364 63.7
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 8.8e-119 431.0 384 60.7
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.3e-117 427.2 364 61.5
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 3.7e-117 425.6 360 63.3
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 1.1e-116 424.1 354 64.1
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 4.1e-116 422.2 339 66.1
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 7.0e-116 421.4 359 61.8
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 4.7e-112 408.7 375 60.5
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 8.0e-112 407.9 410 55.9
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 1.8e-111 406.8 397 56.7
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 4.0e-111 405.6 357 62.7
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 5.2e-111 405.2 268 77.2
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 1.5e-110 403.7 401 55.9
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 7.5e-110 401.4 368 59.8
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 9.8e-110 401.0 369 58.8
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 2.2e-109 399.8 360 61.4
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 2.9e-109 399.4 358 59.2
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 1.1e-108 397.5 326 64.7
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 1.4e-108 397.1 360 61.9
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.4e-108 397.1 374 58.6
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 9.2e-108 394.4 348 60.1
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 1.6e-107 393.7 361 60.4
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 4.6e-107 392.1 362 58.3
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 7.8e-107 391.3 367 59.9
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.7e-106 390.2 352 58.2
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 1.1e-105 387.5 348 60.3
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.9e-105 386.7 356 58.7
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 3.3e-105 386.0 357 58.3
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 5.6e-105 385.2 385 56.9
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 5.6e-105 385.2 329 60.5
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 5.6e-105 385.2 317 64.7
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 9.5e-105 384.4 372 58.6
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 9.5e-105 384.4 354 59.0
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 1.2e-104 384.0 358 59.2
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 2.1e-104 383.3 317 64.4
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 2.8e-104 382.9 391 54.5
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 3.6e-104 382.5 352 59.7
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 3.6e-104 382.5 290 68.3
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 4.7e-104 382.1 352 60.5
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.4e-103 380.6 368 54.9
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 4.0e-103 379.0 500 46.4
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 8.9e-103 377.9 376 55.9
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 2.0e-102 376.7 378 54.8
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 2.6e-102 376.3 370 56.2
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 2.6e-102 376.3 356 59.0
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 3.4e-102 375.9 351 57.3
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 2.9e-101 372.9 353 57.8
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 3.7e-101 372.5 370 55.4
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 3.7e-101 372.5 341 60.1
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 3.7e-101 372.5 348 59.5
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 1.1e-100 370.9 333 58.6
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 1.9e-100 370.2 351 57.3
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.9e-100 370.2 379 53.8
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 1.2e-99 367.5 335 57.6
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 1.6e-99 367.1 362 57.2
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 2.0e-99 366.7 354 57.1
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 2.7e-99 366.3 363 56.2
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 3.5e-99 365.9 302 64.2
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 3.5e-99 365.9 296 65.9
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 6.0e-99 365.2 371 55.5
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 1.0e-98 364.4 389 54.8
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 1.3e-98 364.0 389 54.8
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 1.3e-98 364.0 375 55.5
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 1.3e-98 364.0 341 58.4
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 2.3e-98 363.2 295 61.7
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 8.6e-98 361.3 243 72.8
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 1.2e-96 357.5 366 54.6
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 1.2e-96 357.5 371 54.2
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 6.2e-96 355.1 386 52.1
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 6.2e-96 355.1 245 71.8
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 5.8e-94 348.6 301 62.1
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 1.7e-93 347.1 323 57.6
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 2.9e-93 346.3 250 69.6
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 1.4e-92 344.0 359 56.3
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 1.4e-92 344.0 357 52.7
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 5.1e-90 335.5 383 51.2
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 5.1e-90 335.5 356 53.4
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 7.3e-89 331.6 347 56.2
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.2e-88 330.9 269 62.8
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 2.1e-88 330.1 300 60.3
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.1e-87 327.8 369 53.4
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 1.8e-87 327.0 331 53.5
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.2e-86 324.3 280 60.7
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 7.6e-86 321.6 372 50.3
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.3e-85 320.9 341 51.0
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 1.7e-85 320.5 346 51.4
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 4.9e-85 318.9 395 48.1
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 2.1e-83 313.5 357 50.7
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 4.6e-83 312.4 335 52.8
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 1.0e-82 311.2 250 63.6
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 3.0e-82 309.7 360 48.6
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 6.6e-82 308.5 335 50.4
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 8.6e-82 308.1 307 54.1
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 1.9e-81 307.0 297 55.6
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 4.3e-81 305.8 393 46.3
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 1.2e-80 304.3 239 64.0
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 2.8e-80 303.1 247 62.3
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 4.7e-80 302.4 363 49.3
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 8.9e-79 298.1 257 60.7
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 3.4e-78 296.2 362 47.5
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 2.2e-77 293.5 357 47.6
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 4.2e-76 289.3 300 54.3
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 6.0e-75 285.4 364 45.9
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 7.8e-75 285.0 209 67.0
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 1.5e-73 280.8 238 58.0
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 4.0e-71 272.7 187 71.7
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 9.0e-71 271.6 240 55.8
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 9.0e-71 271.6 187 72.2
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 1.5e-70 270.8 226 60.6
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 1.6e-67 260.8 291 48.5
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 1.0e-66 258.1 186 67.2
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 6.6e-66 255.4 357 43.7
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.1e-65 254.6 244 54.1
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 1.1e-63 248.1 220 58.6
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 1.7e-61 240.7 169 68.6
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 6.4e-61 238.8 178 64.6
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 3.2e-60 236.5 193 61.7
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 8.7e-58 228.4 178 61.8
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 2.8e-48 196.8 218 49.1
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 2.4e-47 193.7 229 46.7
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 3.0e-42 176.8 131 61.8
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 3.7e-40 169.9 240 38.8
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 6.5e-37 159.1 99 76.8
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.1e-36 158.3 173 54.3
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 2.5e-36 157.1 274 42.0
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 4.6e-35 152.9 224 39.7
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 6.7e-34 149.1 85 83.5
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.7e-32 144.4 85 76.5
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 2.2e-32 144.1 146 56.8
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 1.4e-31 141.4 88 72.7
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 3.4e-30 136.7 211 39.8
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 2.2e-29 134.0 110 66.4
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 6.5e-29 132.5 107 58.9
Thecc.04G185700 Theobroma cacao HOM05D004358 ORTHO05D004960 3.0e-26 123.6 73 87.7
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 2.0e-22 110.9 111 54.1
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 8.5e-21 105.5 98 58.2
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 1.1e-20 105.1 155 45.2
BcaC01g05951 Brassica carinata HOM05D004358 ORTHO05D004960 2.6e-17 94.0 168 39.3
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.2e-16 90.9 149 40.9
Haze_01519 Corylus avellana HOM05D004358 ORTHO05D004960 2.8e-16 90.5 108 50.0
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 2.7e-14 84.0 61 62.3
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.0e-13 82.0 104 44.2
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.3e-13 81.6 69 56.5
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 2.5e-12 77.4 51 70.6
CAN.G1292.3 Capsicum annuum HOM05D004358 ORTHO05D004960 4.2e-12 76.6 61 57.4
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 1.2e-11 75.1 51 68.6
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 3.6e-11 73.6 148 31.8
Sabra07G0103800 Salix brachista HOM05D004358 ORTHO05D004960 1.4e-10 71.6 98 46.9
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 1.8e-10 71.2 37 83.8
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 1.8e-10 71.2 30 93.3
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 6.8e-10 69.3 145 28.3
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 2.6e-09 67.4 184 28.3
Thecc.04G185600 Theobroma cacao HOM05D004358 ORTHO05D004960 4.4e-09 66.6 32 96.9
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 9.8e-09 65.5 212 25.9
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 1.3e-08 65.1 122 31.1
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 2.2e-08 64.3 178 26.4
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 2.4e-07 60.8 197 24.9
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 7.0e-07 59.3 220 25.5
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 4.5e-06 56.6 184 25.0


User provided reference genes

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