Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 4.7e-259 897.5 507 100.0
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 6.4e-208 727.6 503 77.9
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 1.0e-189 667.2 512 72.5
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 9.4e-183 644.0 512 71.1
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 2.0e-180 636.3 499 69.5
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 2.0e-177 626.3 513 68.4
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 1.8e-173 613.2 497 70.0
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 2.9e-168 595.9 508 67.1
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 2.1e-166 589.7 496 66.3
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 7.0e-162 574.7 477 66.9
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 4.4e-156 555.4 488 64.8
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 2.4e-146 523.1 510 59.0
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 2.3e-144 516.5 507 60.6
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 8.6e-144 514.6 512 60.4
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 2.5e-143 513.1 518 58.3
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 1.6e-142 510.4 517 57.6
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 8.0e-142 508.1 514 57.4
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.0e-141 507.7 507 60.0
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 3.4e-140 502.7 491 59.1
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 7.5e-140 501.5 507 59.6
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 3.2e-138 496.1 514 57.0
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 4.1e-138 495.7 489 58.1
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 2.9e-136 489.6 521 57.8
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 1.9e-135 486.9 497 57.7
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 3.3e-135 486.1 483 58.6
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 4.3e-135 485.7 497 57.5
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 5.6e-135 485.3 487 59.3
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 9.5e-135 484.6 494 58.1
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 9.5e-135 484.6 499 57.5
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 1.6e-134 483.8 481 58.2
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 2.8e-134 483.0 488 58.4
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 3.6e-134 482.6 488 59.4
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 1.2e-132 477.6 489 57.3
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 1.2e-132 477.6 508 56.1
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 2.6e-132 476.5 488 57.6
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 2.6e-132 476.5 523 56.0
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 4.4e-132 475.7 492 57.9
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 5.8e-132 475.3 480 58.3
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 1.4e-130 470.7 506 55.1
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 1.4e-130 470.7 520 54.2
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 1.4e-130 470.7 505 57.0
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 4.1e-130 469.2 508 54.1
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 9.2e-130 468.0 485 57.1
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 1.2e-129 467.6 500 56.2
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 1.6e-129 467.2 518 56.0
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 1.6e-129 467.2 497 53.7
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 3.5e-129 466.1 514 52.9
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 2.3e-128 463.4 479 56.2
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 3.6e-126 456.1 482 55.2
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 3.2e-122 443.0 481 54.7
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 3.5e-121 439.5 479 54.3
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 1.7e-120 437.2 509 53.6
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 3.9e-120 436.0 502 50.8
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 2.5e-119 433.3 489 51.7
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 3.3e-119 433.0 496 51.2
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 4.3e-119 432.6 471 56.3
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 7.3e-119 431.8 495 51.1
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 7.3e-119 431.8 485 52.6
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 1.6e-118 430.6 478 52.9
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 2.1e-118 430.3 485 54.6
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 4.7e-118 429.1 480 53.3
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 6.2e-118 428.7 477 52.6
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 6.2e-118 428.7 485 54.4
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 4.0e-117 426.0 482 51.7
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 1.2e-116 424.5 479 52.4
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 3.4e-116 422.9 482 52.9
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 7.6e-116 421.8 489 53.8
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 9.9e-116 421.4 480 51.9
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 8.4e-115 418.3 482 52.3
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 1.1e-114 417.9 485 51.8
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 2.4e-114 416.8 496 49.6
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 7.1e-114 415.2 489 53.4
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 4.6e-113 412.5 483 50.9
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 1.3e-112 411.0 483 50.1
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 2.3e-112 410.2 478 52.3
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 1.2e-110 404.4 478 50.2
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 2.8e-110 403.3 477 50.7
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 1.8e-109 400.6 502 50.8
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 3.1e-109 399.8 466 51.9
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 5.2e-109 399.1 508 48.6
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 8.9e-109 398.3 478 49.6
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 1.3e-107 394.4 520 48.1
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 2.4e-106 390.2 647 42.0
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 5.4e-106 389.0 491 48.1
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 2.4e-101 373.6 357 61.6
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 3.4e-100 369.8 393 56.2
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 2.4e-98 363.6 498 46.4
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 4.2e-98 362.8 425 53.9
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 1.7e-96 357.5 443 53.0
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 1.1e-95 354.8 425 52.9
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 9.6e-95 351.7 348 61.8
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 9.6e-95 351.7 372 55.4
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 1.0e-88 331.6 359 53.2
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 2.8e-86 323.6 383 52.0
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 7.6e-84 315.5 441 45.1
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 1.3e-80 304.7 352 54.8
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 2.5e-74 283.9 445 42.5
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.9e-71 274.2 442 42.3
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 1.3e-67 261.5 161 88.8
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 2.7e-65 253.8 351 48.4
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.7e-62 244.6 308 51.6
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 8.2e-62 242.3 375 41.9
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 1.2e-57 228.4 315 46.3
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 8.2e-54 215.7 176 61.4
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 2.6e-52 210.7 483 32.9
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 3.2e-50 203.8 345 45.5
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 8.2e-46 189.1 327 39.8
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 1.8e-45 188.0 101 95.0
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 4.2e-42 176.8 641 28.9
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 7.5e-39 166.0 381 36.5
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 9.8e-39 165.6 142 62.0
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 4.1e-37 160.2 100 77.0
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 7.0e-37 159.5 90 85.6
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 1.9e-34 151.4 92 77.2
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.9e-27 127.5 305 34.8
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 1.5e-26 125.2 170 54.7
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 4.7e-25 120.2 158 52.5
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 4.0e-24 117.1 59 96.6
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 1.8e-21 108.2 90 60.0
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 5.9e-20 103.2 155 47.7
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.8e-16 91.7 332 28.6
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.8e-16 91.7 90 48.9
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 3.1e-16 90.9 94 46.8
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 1.1e-13 82.4 42 83.3
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 2.4e-13 81.3 83 45.8
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 2.0e-12 78.2 109 46.8
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 6.6e-11 73.2 43 76.7
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 6.6e-11 73.2 43 76.7
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 9.5e-10 69.3 49 65.3
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 1.6e-09 68.6 47 63.8
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 5.2e-08 63.5 33 87.9
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 6.8e-08 63.2 35 82.9
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 3.4e-07 60.8 63 50.8
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 9.8e-07 59.3 52 61.5
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 2.2e-06 58.2 41 68.3
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 3.7e-06 57.4 49 57.1


User provided reference genes

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