Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 1.0e-105 386.7 195 100.0
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.0e-100 370.2 193 96.4
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 2.7e-98 362.1 195 89.2
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 5.2e-97 357.8 193 89.6
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 4.8e-95 351.3 195 86.7
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 3.1e-94 348.6 195 85.6
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 4.1e-94 348.2 195 86.2
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 5.9e-93 344.4 195 85.6
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 1.3e-92 343.2 195 84.1
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.5e-91 339.7 193 84.5
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 7.2e-91 337.4 192 84.4
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.7e-90 335.5 195 82.1
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 3.6e-90 335.1 195 81.5
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 1.0e-89 333.6 195 82.1
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-89 332.8 195 81.0
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 1.8e-89 332.8 195 81.5
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 5.7e-88 327.8 195 79.5
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.7e-87 326.2 195 79.5
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 2.2e-87 325.9 195 79.5
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 6.3e-87 324.3 195 79.0
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 8.2e-87 323.9 195 79.5
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 8.2e-87 323.9 195 79.5
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.8e-86 322.8 195 79.0
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.8e-86 322.8 195 79.0
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.8e-86 322.8 195 78.5
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 2.4e-86 322.4 195 79.5
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.1e-86 321.6 195 78.5
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.1e-86 321.6 195 78.5
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 7.0e-86 320.9 195 78.5
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.2e-85 320.1 195 77.9
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.2e-85 320.1 195 77.9
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.6e-85 319.7 195 77.4
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 2.0e-85 319.3 195 78.5
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 2.7e-85 318.9 195 79.0
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.7e-85 318.9 195 77.4
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 3.5e-85 318.5 195 77.4
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 5.9e-85 317.8 195 77.4
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 5.9e-85 317.8 195 75.9
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 1.3e-84 316.6 207 74.9
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 2.9e-84 315.5 195 76.9
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 5.0e-84 314.7 195 76.9
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.0e-84 314.7 195 76.9
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 5.0e-84 314.7 195 76.9
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.9e-83 312.8 195 76.9
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.9e-83 312.8 195 76.9
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 3.2e-83 312.0 204 74.0
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 7.2e-83 310.8 195 75.4
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.2e-82 310.1 195 74.9
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 1.2e-82 310.1 204 73.5
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 2.1e-82 309.3 195 76.9
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 2.1e-82 309.3 195 78.5
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 8.0e-82 307.4 195 73.3
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 8.0e-82 307.4 198 74.2
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 8.0e-82 307.4 195 77.4
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 1.8e-81 306.2 195 74.4
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.8e-81 306.2 195 75.4
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.8e-81 306.2 195 75.4
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 2.3e-81 305.8 193 82.4
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 3.0e-81 305.4 195 75.9
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 8.8e-81 303.9 195 74.9
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-80 303.5 195 75.9
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.2e-80 303.5 195 74.4
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 2.0e-80 302.8 195 74.9
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.0e-80 302.8 208 71.6
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 3.4e-80 302.0 195 75.4
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 4.4e-80 301.6 195 72.8
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 3.7e-79 298.5 195 74.4
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.8e-78 296.2 195 71.8
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.4e-78 295.8 195 71.3
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 4.1e-78 295.0 195 71.8
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 5.4e-78 294.7 195 72.8
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 5.4e-78 294.7 195 73.3
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 5.4e-78 294.7 195 73.8
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 5.4e-78 294.7 195 73.8
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 9.1e-78 293.9 195 73.8
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 1.2e-77 293.5 195 73.3
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 2.0e-77 292.7 200 69.5
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 7.7e-77 290.8 195 69.2
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.0e-76 290.4 201 71.1
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 1.3e-76 290.0 195 73.3
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.3e-76 290.0 195 72.3
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.7e-76 289.7 195 72.3
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 2.9e-76 288.9 195 70.8
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 2.9e-76 288.9 194 71.1
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.8e-76 288.5 193 69.9
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.8e-76 288.5 195 70.3
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 5.0e-76 288.1 195 71.3
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 8.6e-76 287.3 191 73.8
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.5e-75 286.6 194 72.2
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 1.5e-75 286.6 219 66.7
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 2.5e-75 285.8 195 72.3
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 2.5e-75 285.8 195 72.3
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 2.5e-75 285.8 195 72.3
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 3.2e-75 285.4 221 63.3
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 7.2e-75 284.3 195 71.8
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 7.2e-75 284.3 195 71.8
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.2e-74 283.5 212 67.0
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 3.6e-74 282.0 212 66.0
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 4.7e-74 281.6 195 71.8
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 6.1e-74 281.2 195 71.8
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 8.0e-74 280.8 195 68.2
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.0e-73 280.4 191 71.2
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 3.0e-73 278.9 191 71.2
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 3.0e-73 278.9 183 73.8
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 3.0e-73 278.9 195 71.3
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 3.0e-73 278.9 195 71.3
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 3.0e-73 278.9 195 71.3
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.3e-71 273.5 213 65.7
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.1e-70 270.4 238 60.1
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.7e-69 265.8 168 76.2
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.3e-68 263.5 247 54.7
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.0e-68 261.5 229 60.3
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 1.3e-63 246.9 200 63.5
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 3.7e-63 245.4 160 73.1
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 6.4e-63 244.6 158 73.4
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.1e-62 243.8 192 62.5
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.4e-62 243.4 195 62.6
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 9.2e-62 240.7 158 74.7
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 9.2e-62 240.7 158 74.7
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 1.2e-61 240.4 196 58.2
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 2.0e-61 239.6 145 79.3
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 3.9e-60 235.3 200 61.5
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.9e-60 235.3 200 61.5
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 6.6e-60 234.6 140 80.0
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.6e-59 231.5 195 55.4
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.6e-58 229.9 200 60.5
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.6e-58 229.9 200 60.5
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 3.6e-58 228.8 119 92.4
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.1e-57 225.7 200 59.0
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 8.9e-57 224.2 138 76.8
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 8.3e-55 217.6 201 57.2
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 7.8e-53 211.1 119 83.2
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 3.0e-52 209.1 141 70.9
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.5e-51 206.8 201 56.2
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 9.5e-51 204.1 195 52.8
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 6.2e-50 201.4 185 50.8
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.2e-48 197.2 147 70.1
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 7.8e-37 157.9 87 86.2
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.2e-33 145.2 101 66.3
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.0e-32 143.3 77 87.0
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.7e-29 132.9 129 51.9
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-28 129.8 138 47.1
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.1e-20 102.1 59 81.4
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 4.3e-19 99.0 51 84.3
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 5.6e-19 98.6 51 90.2
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 9.6e-19 97.8 140 40.7
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 9.6e-19 97.8 51 88.2
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 8.1e-18 94.7 51 86.3
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 7.9e-13 78.2 99 49.5
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.1e-11 74.3 58 58.6
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 4.3e-11 72.4 54 64.8
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 9.6e-11 71.2 99 39.4
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 1.3e-10 70.9 59 57.6
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.3e-10 70.9 36 88.9
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 1.4e-09 67.4 36 86.1
MCO05G517 Micromonas commoda HOM05D003850 ORTHO05D004515 3.2e-06 56.2 145 29.0


User provided reference genes

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