Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33733 Trifolium pratense HOM05D003203 ORTHO05D003526 8.6e-37 156.4 74 100.0
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 5.8e-09 63.9 32 87.5
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 1.3e-08 62.8 32 84.4
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 1.3e-08 62.8 32 84.4
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 1.3e-08 62.8 36 75.0
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 1.3e-08 62.8 32 84.4
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 1.3e-08 62.8 32 84.4
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.3e-08 62.8 32 84.4
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.3e-08 62.8 32 84.4
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 1.3e-08 62.8 32 84.4
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 1.3e-08 62.8 32 84.4
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 1.3e-08 62.8 32 84.4
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 1.3e-08 62.8 32 84.4
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 1.3e-08 62.8 32 84.4
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 1.3e-08 62.8 32 84.4
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 1.7e-08 62.4 32 81.2
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 1.7e-08 62.4 32 81.2
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 1.7e-08 62.4 32 81.2
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 1.7e-08 62.4 32 81.2
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 2.2e-08 62.0 32 81.2
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 2.9e-08 61.6 32 81.2
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 3.8e-08 61.2 32 81.2
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 3.8e-08 61.2 32 81.2
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 3.8e-08 61.2 31 83.9
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 3.8e-08 61.2 31 83.9
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 3.8e-08 61.2 31 83.9
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 3.8e-08 61.2 31 83.9
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 4.9e-08 60.8 31 80.6
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 4.9e-08 60.8 31 80.6
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 4.9e-08 60.8 31 80.6
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 4.9e-08 60.8 32 81.2
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 4.9e-08 60.8 32 81.2
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 4.9e-08 60.8 32 81.2
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 4.9e-08 60.8 32 81.2
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 4.9e-08 60.8 31 80.6
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 4.9e-08 60.8 31 80.6
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 4.9e-08 60.8 31 80.6
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 4.9e-08 60.8 33 78.8
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 4.9e-08 60.8 32 81.2
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 4.9e-08 60.8 32 81.2
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 4.9e-08 60.8 33 78.8
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 4.9e-08 60.8 31 80.6
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 6.5e-08 60.5 32 81.2
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 6.5e-08 60.5 32 81.2
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 6.5e-08 60.5 32 78.1
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 6.5e-08 60.5 32 78.1
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 8.4e-08 60.1 31 80.6
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 8.4e-08 60.1 31 80.6
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 8.4e-08 60.1 31 80.6
MD03G1112400 Malus domestica HOM05D003203 ORTHO05D003526 8.4e-08 60.1 31 80.6
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 8.4e-08 60.1 31 80.6
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 8.4e-08 60.1 32 78.1
vmacro14465 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 8.4e-08 60.1 32 78.1
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 8.4e-08 60.1 32 78.1
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 8.4e-08 60.1 32 78.1
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.1e-07 59.7 32 78.1
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.1e-07 59.7 32 81.2
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 1.1e-07 59.7 32 81.2
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 1.1e-07 59.7 32 81.2
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 1.1e-07 59.7 32 81.2
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 1.1e-07 59.7 32 78.1
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 1.1e-07 59.7 31 77.4
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 1.1e-07 59.7 32 81.2
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 1.1e-07 59.7 32 78.1
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.1e-07 59.7 36 72.2
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 1.1e-07 59.7 32 81.2
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 1.1e-07 59.7 32 81.2
TPR.G38674 Trifolium pratense HOM05D003203 ORTHO05D003526 1.1e-07 59.7 32 78.1
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 1.4e-07 59.3 32 81.2
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 1.4e-07 59.3 32 81.2
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 1.4e-07 59.3 32 81.2
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 1.4e-07 59.3 32 81.2
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 1.4e-07 59.3 32 81.2
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 1.4e-07 59.3 32 81.2
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 1.4e-07 59.3 32 78.1
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 1.4e-07 59.3 32 81.2
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 1.9e-07 58.9 32 78.1
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 1.9e-07 58.9 32 78.1
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 1.9e-07 58.9 32 78.1
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 1.9e-07 58.9 32 75.0
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 2.5e-07 58.5 32 75.0
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 2.5e-07 58.5 31 80.6
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 2.5e-07 58.5 31 80.6
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 2.5e-07 58.5 32 78.1
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 2.5e-07 58.5 31 77.4
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 3.2e-07 58.2 32 78.1
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 3.2e-07 58.2 32 75.0
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 3.2e-07 58.2 32 78.1
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 3.2e-07 58.2 31 80.6
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 3.2e-07 58.2 31 74.2
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 3.2e-07 58.2 31 74.2
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 3.2e-07 58.2 31 77.4
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 3.2e-07 58.2 31 74.2
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 4.2e-07 57.8 32 78.1
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 4.2e-07 57.8 32 78.1
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 4.2e-07 57.8 32 78.1
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 4.2e-07 57.8 32 75.0
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 4.2e-07 57.8 32 75.0
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 4.2e-07 57.8 32 75.0
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 5.5e-07 57.4 32 78.1
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 5.5e-07 57.4 32 78.1
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 5.5e-07 57.4 32 78.1
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 5.5e-07 57.4 31 77.4
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 5.5e-07 57.4 31 77.4
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 7.1e-07 57.0 32 78.1
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 7.1e-07 57.0 32 71.9
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 9.3e-07 56.6 32 78.1
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 9.3e-07 56.6 32 78.1
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 9.3e-07 56.6 32 78.1
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 9.3e-07 56.6 32 75.0
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 9.3e-07 56.6 32 78.1
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 1.2e-06 56.2 32 75.0
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 1.2e-06 56.2 32 71.9
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.2e-06 56.2 32 75.0
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 1.6e-06 55.8 32 75.0
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 2.1e-06 55.5 32 75.0
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 2.1e-06 55.5 32 75.0
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 2.1e-06 55.5 32 65.6
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 2.1e-06 55.5 31 74.2
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 2.7e-06 55.1 32 71.9
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 4.6e-06 54.3 31 67.7
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 4.6e-06 54.3 31 67.7


User provided reference genes

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