Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2853 Trifolium pratense HOM05D003203 ORTHO05D003526 1.2e-46 189.5 94 100.0
TPR.G39593 Trifolium pratense HOM05D003203 ORTHO05D051454 1.8e-18 95.9 51 94.1
TPR.G39558 Trifolium pratense HOM05D000974 ORTHO05D002201 6.7e-18 94.0 48 95.8
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 6.3e-16 87.4 50 88.0
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 6.3e-16 87.4 50 88.0
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 6.3e-16 87.4 50 88.0
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 2.4e-15 85.5 97 52.6
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 3.1e-15 85.1 45 88.9
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 4.1e-15 84.7 45 86.7
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 4.1e-15 84.7 47 85.1
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 6.9e-15 84.0 79 62.0
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 9.0e-15 83.6 52 80.8
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 1.2e-14 83.2 52 82.7
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 1.2e-14 83.2 50 84.0
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.2e-14 83.2 50 84.0
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.2e-14 83.2 50 84.0
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 1.2e-14 83.2 79 62.0
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 1.5e-14 82.8 50 84.0
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 1.5e-14 82.8 50 84.0
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 1.5e-14 82.8 50 84.0
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 1.5e-14 82.8 52 78.8
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 1.5e-14 82.8 50 84.0
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 1.5e-14 82.8 52 80.8
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 1.5e-14 82.8 52 80.8
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 1.5e-14 82.8 50 84.0
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 2.0e-14 82.4 44 86.4
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 2.0e-14 82.4 56 71.4
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 2.6e-14 82.0 79 60.8
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 2.6e-14 82.0 50 84.0
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 2.6e-14 82.0 50 84.0
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 2.6e-14 82.0 47 83.0
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 3.4e-14 81.6 50 82.0
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 3.4e-14 81.6 61 72.1
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 3.4e-14 81.6 50 82.0
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 3.4e-14 81.6 50 82.0
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 3.4e-14 81.6 50 82.0
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 3.4e-14 81.6 45 86.7
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 4.5e-14 81.3 45 84.4
vmacro14465 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 4.5e-14 81.3 47 80.9
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 5.9e-14 80.9 50 84.0
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 7.7e-14 80.5 79 59.5
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 7.7e-14 80.5 79 58.2
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.0e-13 80.1 79 59.5
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 1.0e-13 80.1 44 86.4
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 1.0e-13 80.1 47 80.9
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 1.0e-13 80.1 45 84.4
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 1.0e-13 80.1 44 86.4
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.0e-13 80.1 54 77.8
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.3e-13 79.7 52 80.8
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.3e-13 79.7 58 70.7
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 1.3e-13 79.7 50 82.0
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 1.3e-13 79.7 52 76.9
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 1.7e-13 79.3 45 84.4
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 1.7e-13 79.3 45 84.4
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 1.7e-13 79.3 50 82.0
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.7e-13 79.3 50 82.0
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.7e-13 79.3 50 82.0
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 1.7e-13 79.3 50 82.0
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 1.7e-13 79.3 42 90.5
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 1.7e-13 79.3 42 90.5
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 1.7e-13 79.3 50 82.0
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 1.7e-13 79.3 42 90.5
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 2.2e-13 79.0 79 60.8
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 2.2e-13 79.0 56 73.2
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 2.2e-13 79.0 50 82.0
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 2.2e-13 79.0 50 80.0
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 2.9e-13 78.6 52 76.9
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 2.9e-13 78.6 52 76.9
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 2.9e-13 78.6 52 76.9
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 2.9e-13 78.6 52 76.9
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 2.9e-13 78.6 52 76.9
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 2.9e-13 78.6 50 80.0
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 2.9e-13 78.6 50 80.0
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 2.9e-13 78.6 47 78.7
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 2.9e-13 78.6 52 76.9
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 3.8e-13 78.2 52 75.0
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 3.8e-13 78.2 52 76.9
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 3.8e-13 78.2 52 78.8
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 3.8e-13 78.2 47 78.7
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 3.8e-13 78.2 43 86.0
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 5.0e-13 77.8 52 76.9
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 5.0e-13 77.8 50 80.0
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 5.0e-13 77.8 44 84.1
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 5.0e-13 77.8 44 84.1
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 5.0e-13 77.8 44 84.1
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 5.0e-13 77.8 44 86.4
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 5.0e-13 77.8 45 82.2
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 5.0e-13 77.8 45 82.2
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 6.5e-13 77.4 44 81.8
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 6.5e-13 77.4 44 81.8
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 6.5e-13 77.4 69 59.4
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 8.5e-13 77.0 52 75.0
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 8.5e-13 77.0 52 76.9
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 8.5e-13 77.0 52 76.9
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 8.5e-13 77.0 52 76.9
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 8.5e-13 77.0 40 90.0
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 8.5e-13 77.0 46 84.8
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 1.1e-12 76.6 52 73.1
MD03G1112400 Malus domestica HOM05D003203 ORTHO05D003526 1.1e-12 76.6 50 78.0
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 1.1e-12 76.6 50 78.0
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 1.1e-12 76.6 50 78.0
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 1.1e-12 76.6 52 75.0
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 1.1e-12 76.6 52 75.0
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 1.1e-12 76.6 50 80.0
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 1.1e-12 76.6 50 80.0
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 1.4e-12 76.3 52 75.0
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 1.4e-12 76.3 50 76.0
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 1.9e-12 75.9 50 80.0
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 1.9e-12 75.9 50 80.0
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 1.9e-12 75.9 50 78.0
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 2.5e-12 75.5 50 78.0
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 2.5e-12 75.5 52 75.0
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 2.5e-12 75.5 75 56.0
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 2.5e-12 75.5 40 87.5
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 2.5e-12 75.5 50 76.0
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 4.2e-12 74.7 42 85.7
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 4.2e-12 74.7 50 78.0
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 5.5e-12 74.3 50 76.0
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 5.5e-12 74.3 50 76.0
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 5.5e-12 74.3 45 77.8
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 5.5e-12 74.3 69 59.4
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 5.5e-12 74.3 42 85.7
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 3.6e-11 71.6 53 75.5
TPR.G17961 Trifolium pratense HOM05D003203 ORTHO05D051454 3.0e-10 68.6 32 100.0
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 3.3e-09 65.1 72 52.8
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 3.3e-09 65.1 50 68.0
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.7e-08 61.6 52 63.5
AagrBONN_evm.TU.Sc2ySwM_117.4032 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.7e-08 61.6 52 63.5
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.7e-08 61.6 52 63.5
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.7e-08 61.6 52 63.5
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.7e-08 61.6 52 63.5
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.7e-08 61.6 52 63.5
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.7e-08 61.6 52 63.5
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.7e-08 61.6 52 63.5
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 6.3e-08 60.8 44 65.9
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 1.4e-07 59.7 42 71.4


User provided reference genes

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