Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 0.0e+00 1547.7 785 100.0
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 0.0e+00 1330.1 758 86.1
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 0.0e+00 1310.8 758 85.0
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 0.0e+00 1167.9 730 79.3
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 0.0e+00 1167.5 753 76.1
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 0.0e+00 1140.9 763 74.3
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 0.0e+00 1138.3 785 71.5
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 0.0e+00 1122.1 754 73.7
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 0.0e+00 1107.0 750 72.7
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 1.8e-305 1052.4 752 70.1
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 3.0e-297 1025.0 610 82.5
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 2.8e-295 1018.5 788 62.7
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 4.1e-294 1014.6 772 63.1
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 1.6e-290 1002.7 730 65.9
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 2.7e-290 1001.9 688 66.4
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 6.1e-290 1000.7 757 63.4
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 6.1e-290 1000.7 702 67.2
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 1.0e-289 1000.0 715 66.6
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 4.0e-289 998.0 688 66.7
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 2.6e-288 995.3 756 63.5
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 9.7e-288 993.4 704 66.2
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 8.2e-287 990.3 690 67.5
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 2.9e-284 981.9 702 67.1
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 8.5e-284 980.3 712 65.6
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 1.1e-283 979.9 795 61.6
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 2.7e-282 975.3 759 62.6
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 3.0e-281 971.8 779 62.3
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 1.5e-280 969.5 738 63.7
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.0e-280 969.1 738 63.7
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 2.2e-279 965.7 696 65.7
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 2.8e-279 965.3 783 62.1
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 3.1e-278 961.8 688 65.8
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 4.1e-278 961.4 658 67.5
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 5.4e-278 961.1 716 64.8
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 4.5e-277 958.0 753 62.2
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 7.7e-277 957.2 744 62.8
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 3.8e-276 954.9 688 65.4
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 3.8e-276 954.9 713 64.2
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 3.2e-275 951.8 746 60.9
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.2e-275 951.4 753 60.8
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 3.6e-274 948.3 688 65.1
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.4e-273 946.4 746 60.6
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.7e-271 939.5 751 60.5
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 4.1e-270 934.9 776 60.2
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 8.6e-268 927.2 706 62.5
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 7.3e-267 924.1 693 62.3
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 1.2e-266 923.3 680 63.2
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 6.1e-266 921.0 758 59.9
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 3.0e-265 918.7 753 60.2
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 2.0e-264 916.0 717 61.5
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 2.0e-264 916.0 702 61.4
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 2.9e-263 912.1 757 59.2
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 1.8e-262 909.4 754 63.4
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 1.5e-259 899.8 740 60.7
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.6e-258 896.3 793 56.7
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 1.6e-258 896.3 680 61.6
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.4e-256 888.3 622 67.4
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 2.2e-255 885.9 703 61.0
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 1.6e-253 879.8 680 61.2
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 3.9e-252 875.2 682 60.4
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 9.5e-251 870.5 682 60.3
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.2e-250 870.2 746 57.8
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 4.0e-249 865.1 731 58.0
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 5.8e-248 861.3 703 59.2
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 6.4e-247 857.8 659 61.5
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 1.9e-246 856.3 691 59.8
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 4.1e-246 855.1 686 59.3
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 5.4e-246 854.7 666 59.8
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 1.6e-245 853.2 683 59.6
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 3.5e-245 852.0 782 55.5
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 3.9e-244 848.6 688 58.3
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.5e-243 846.7 765 54.6
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 7.3e-243 844.3 769 54.9
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 1.2e-242 843.6 666 59.0
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 1.4e-241 840.1 666 58.7
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 1.4e-241 840.1 666 58.7
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 1.4e-241 840.1 666 58.7
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 2.0e-240 836.3 682 59.4
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 1.3e-239 833.6 743 54.5
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 1.7e-239 833.2 666 58.7
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 1.5e-235 820.1 663 58.7
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 7.3e-235 817.8 711 56.5
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 9.3e-230 800.8 681 55.5
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 2.1e-229 799.7 688 56.4
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 2.1e-229 799.7 703 54.3
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 2.1e-229 799.7 649 58.2
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 6.0e-229 798.1 609 62.2
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 1.1e-227 793.9 649 58.2
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 7.3e-227 791.2 712 52.9
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 4.0e-225 785.4 686 53.8
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 2.2e-223 779.6 595 63.0
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 4.6e-221 771.9 692 54.0
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 6.9e-217 758.1 737 51.4
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 4.5e-216 755.4 735 52.0
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 6.4e-215 751.5 762 50.4
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 9.3e-214 747.7 607 57.8
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 9.0e-201 704.5 534 62.5
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 5.9e-192 675.2 795 46.7
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 3.7e-178 629.4 679 46.8
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.8e-169 600.5 474 61.2
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 4.4e-163 579.3 638 46.4
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 4.4e-139 499.6 376 62.0
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 1.3e-138 498.0 455 53.6
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 3.1e-116 423.7 485 46.4
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.9e-114 416.4 589 42.3
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-100 372.1 473 44.6
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 1.5e-99 368.2 304 60.9
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.8e-91 339.7 372 51.6
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 5.1e-87 326.6 658 30.4
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 5.0e-82 310.1 299 50.8
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 1.9e-78 298.1 271 56.8
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 3.3e-70 270.8 646 26.8
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 8.5e-66 256.1 673 27.0
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 1.2e-64 252.3 692 25.3
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.8e-52 211.8 659 24.7
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.0e-50 206.1 119 74.8
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 9.8e-46 189.5 175 58.3
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.8e-42 177.6 665 23.5
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 3.4e-38 164.5 115 64.3
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 7.0e-28 130.2 198 38.4
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 4.3e-25 120.9 153 45.1
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 1.3e-18 99.4 692 19.5
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 2.6e-14 85.1 90 46.7
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 5.8e-14 84.0 622 19.6
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 9.9e-14 83.2 50 70.0
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 1.6e-11 75.9 50 64.0
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 4.6e-11 74.3 58 60.3
PGSC0003DMG400040010 Solanum tuberosum HOM05D000891 ORTHO05D000761 1.6e-08 65.9 285 24.2
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 2.1e-08 65.5 299 23.4
Prupe.7G151800 Prunus persica HOM05D000891 ORTHO05D000761 1.4e-07 62.8 276 24.3
SEGI_25615 Sequoiadendron giganteum HOM05D006258 ORTHO05D007961 1.8e-07 62.4 215 23.7
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 5.2e-07 60.8 297 23.2
ClCG07G009040 Citrullus lanatus HOM05D000891 ORTHO05D000761 2.0e-06 58.9 272 23.2
Nitab4.5_0013032g0040 Nicotiana tabacum HOM05D000891 ORTHO05D000761 5.8e-06 57.4 272 23.5
CsaV3_6G016810 Cucumis sativus L. HOM05D006354 ORTHO05D007773 7.6e-06 57.0 396 18.9


User provided reference genes

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