Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 4.2e-114 414.8 228 100.0
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 1.8e-88 329.7 243 73.3
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 3.3e-79 298.9 212 76.4
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.3e-78 297.0 205 80.0
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.3e-78 297.0 205 80.0
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 1.5e-76 290.0 213 79.3
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 5.5e-74 281.6 209 78.5
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 6.1e-73 278.1 212 76.9
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 5.1e-72 275.0 208 81.2
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 3.3e-71 272.3 213 77.5
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 1.1e-69 267.3 190 82.1
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 2.5e-66 256.1 212 74.1
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 4.7e-65 251.9 213 67.6
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 4.4e-63 245.4 208 65.9
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.0e-59 234.2 207 66.7
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 1.0e-59 234.2 207 72.5
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 3.8e-59 232.3 208 67.8
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 6.5e-59 231.5 212 71.2
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 6.5e-59 231.5 210 67.6
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 6.5e-59 231.5 214 64.5
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 9.4e-58 227.6 207 66.2
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 1.6e-57 226.9 207 67.1
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 2.1e-57 226.5 212 59.9
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 2.1e-57 226.5 212 64.6
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 4.7e-57 225.3 181 68.0
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 3.9e-56 222.2 207 60.4
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 5.2e-56 221.9 212 59.0
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.0e-55 219.9 214 62.1
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 4.4e-55 218.8 213 64.3
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 3.7e-54 215.7 207 65.2
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 4.8e-54 215.3 212 64.2
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 8.2e-54 214.5 213 65.7
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 3.1e-53 212.6 211 66.4
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 3.1e-53 212.6 205 69.3
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 9.1e-53 211.1 240 53.3
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.2e-52 210.7 216 60.6
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.6e-52 210.3 203 58.1
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 7.7e-52 208.0 240 57.9
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 1.7e-51 206.8 209 59.3
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 3.8e-51 205.7 182 68.7
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 3.8e-51 205.7 207 57.5
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 1.9e-50 203.4 208 67.8
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 4.2e-50 202.2 208 65.4
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 9.4e-50 201.1 212 64.2
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 9.4e-50 201.1 212 64.2
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 2.1e-49 199.9 184 71.7
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 3.6e-49 199.1 206 66.0
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 8.8e-48 194.5 211 59.2
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 4.4e-47 192.2 191 59.7
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 5.7e-47 191.8 205 56.6
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 5.7e-47 191.8 205 56.6
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 1.3e-46 190.7 212 61.8
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 3.7e-46 189.1 206 63.1
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 8.3e-46 188.0 209 67.0
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.4e-45 186.4 208 55.8
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 2.4e-45 186.4 220 52.7
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 7.0e-45 184.9 205 55.6
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 9.1e-45 184.5 208 55.3
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 1.2e-44 184.1 209 66.5
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 3.5e-44 182.6 209 67.5
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 3.5e-44 182.6 210 57.6
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 4.5e-44 182.2 211 59.2
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 4.5e-44 182.2 209 57.9
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 4.5e-44 182.2 213 62.9
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 5.9e-44 181.8 223 58.3
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 1.0e-43 181.0 191 59.7
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.3e-43 180.6 214 52.8
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 1.7e-43 180.3 186 55.9
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 3.8e-43 179.1 225 52.9
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 3.8e-43 179.1 161 70.8
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 1.6e-41 173.7 201 52.7
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 2.7e-41 172.9 186 60.8
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 3.6e-41 172.6 209 51.2
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 8.0e-41 171.4 120 75.0
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 1.8e-40 170.2 222 56.3
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 2.3e-40 169.9 126 70.6
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 8.8e-40 167.9 219 50.7
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 1.5e-39 167.2 204 52.9
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 3.4e-39 166.0 227 48.0
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 9.8e-39 164.5 207 53.1
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 1.3e-38 164.1 212 59.9
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 1.7e-38 163.7 227 48.0
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 1.7e-38 163.7 111 75.7
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.2e-38 163.3 206 52.9
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 3.7e-38 162.5 207 59.4
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 3.7e-38 162.5 206 50.5
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 4.9e-38 162.2 247 50.6
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 8.3e-38 161.4 197 51.3
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.1e-37 161.0 118 73.7
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.1e-37 161.0 118 73.7
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.8e-37 160.2 227 48.0
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 2.4e-37 159.8 213 49.8
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 3.1e-37 159.5 185 58.9
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 3.1e-37 159.5 125 69.6
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 7.0e-37 158.3 206 55.3
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 9.1e-37 157.9 205 58.5
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 1.2e-36 157.5 114 72.8
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 1.2e-36 157.5 114 72.8
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 1.2e-36 157.5 123 65.9
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 1.6e-36 157.1 206 47.6
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.6e-36 157.1 171 54.4
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.6e-36 157.1 171 54.4
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 1.6e-36 157.1 128 69.5
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 2.0e-36 156.8 207 57.0
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.0e-36 156.8 227 47.6
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 5.9e-36 155.2 113 69.9
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 1.3e-35 154.1 269 40.9
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 1.3e-35 154.1 224 46.9
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 1.7e-35 153.7 204 54.9
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 1.7e-35 153.7 127 66.9
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 2.3e-35 153.3 224 46.4
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 3.8e-35 152.5 228 46.1
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 5.0e-35 152.1 205 56.6
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 8.6e-35 151.4 109 71.6
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 8.6e-35 151.4 188 52.7
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 1.5e-34 150.6 206 54.9
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 2.5e-34 149.8 88 83.0
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 2.5e-34 149.8 118 66.9
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 3.3e-34 149.4 221 51.1
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 3.3e-34 149.4 186 51.1
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 3.3e-34 149.4 100 73.0
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 4.2e-34 149.1 211 54.5
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 4.2e-34 149.1 211 54.5
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 5.5e-34 148.7 87 80.5
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 5.5e-34 148.7 186 51.1
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 2.1e-33 146.7 204 55.4
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 4.7e-33 145.6 188 49.5
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 3.0e-32 142.9 205 51.2
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 4.0e-32 142.5 212 52.4
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 4.0e-32 142.5 118 67.8
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 1.3e-30 137.5 227 46.7
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 1.3e-30 137.5 108 70.4
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 1.3e-30 137.5 152 53.3
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 2.2e-30 136.7 229 48.0
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 2.2e-30 136.7 203 47.8
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 6.3e-30 135.2 117 65.0
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 6.3e-30 135.2 225 44.9
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 1.1e-29 134.4 109 65.1
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.1e-29 134.4 221 47.5
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.4e-29 134.0 196 46.4
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 2.4e-29 133.3 218 47.2
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 2.4e-29 133.3 218 47.2
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 5.4e-29 132.1 116 64.7
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 1.2e-28 131.0 126 60.3
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 1.6e-28 130.6 190 47.4
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.6e-28 130.6 228 45.2
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 2.0e-28 130.2 104 65.4
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.7e-28 129.8 206 54.9
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 2.7e-28 129.8 190 46.8
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 5.9e-28 128.6 206 54.4
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.3e-27 127.5 161 50.9
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 5.0e-27 125.6 198 48.5
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 5.6e-26 122.1 196 51.0
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 9.5e-26 121.3 124 58.9
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 1.2e-25 120.9 226 42.9
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 3.6e-25 119.4 74 79.7
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 3.1e-24 116.3 190 53.2
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 3.1e-24 116.3 62 90.3
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 4.0e-24 115.9 250 38.0
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 6.8e-24 115.2 102 62.7
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 6.8e-24 115.2 102 62.7
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 6.8e-24 115.2 78 74.4
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 8.9e-24 114.8 173 52.0
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.4e-23 112.8 225 40.4
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 9.8e-23 111.3 203 51.2
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 9.8e-23 111.3 203 51.2
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 1.1e-21 107.8 138 54.3
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 2.7e-20 103.2 124 48.4
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 1.0e-19 101.3 172 43.0
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 2.3e-19 100.1 96 59.4
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 5.0e-19 99.0 193 52.3
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 1.2e-17 94.4 81 67.9
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 6.2e-17 92.0 198 38.9
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 8.1e-17 91.7 196 39.3
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 3.1e-16 89.7 198 38.4
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 3.7e-14 82.8 41 85.4
Lj5g0006065 Lotus japonicus HOM05D003686 ORTHO05D004322 6.4e-14 82.0 71 64.8
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 4.6e-12 75.9 66 63.6
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 3.1e-08 63.2 41 68.3
PSO384G1563 Papaver somniferum HOM05D003686 ORTHO05D004322 6.4e-06 55.5 78 48.7
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 6.4e-06 55.5 78 48.7
PSO384G1636 Papaver somniferum HOM05D000185 ORTHO05D000105 8.4e-06 55.1 184 36.4


User provided reference genes

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