Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14341 Trifolium pratense HOM05D001061 ORTHO05D006729 8.0e-130 467.2 260 100.0
Medtr1g100683 Medicago truncatula HOM05D001061 ORTHO05D006729 3.8e-103 378.6 208 90.4
Ca_10778_v3 Cicer arietinum L. HOM05D001061 ORTHO05D006729 2.4e-102 375.9 217 87.6
Lj5g0016766 Lotus japonicus HOM05D001061 ORTHO05D006729 1.1e-99 367.1 203 88.7
Psat6g199840 Pisum sativum HOM05D001061 ORTHO05D006729 1.5e-96 356.7 194 90.7
arahy.Tifrunner.gnm1.ann1.353VBZ Arachis hypogaea HOM05D001061 ORTHO05D006729 1.6e-93 346.7 208 82.7
arahy.Tifrunner.gnm1.ann1.U4UA85 Arachis hypogaea HOM05D001061 ORTHO05D006729 1.6e-93 346.7 208 82.7
Hma1.2p1_3335F.1_g335330 Hydrangea macrophylla HOM05D001061 ORTHO05D006729 2.7e-93 345.9 213 80.3
Dinv28450 Davidia involucrata HOM05D001061 ORTHO05D006729 1.3e-92 343.6 208 80.3
Actinidia34106 Actinidia chinensis HOM05D001061 ORTHO05D006729 3.0e-92 342.4 208 78.4
GSVIVG01006611001 Vitis vinifera HOM05D001061 ORTHO05D006729 3.9e-92 342.0 208 79.3
GSVIVG01007141001 Vitis vinifera HOM05D001061 ORTHO05D006729 1.9e-91 339.7 208 78.8
Nn1g01435 Nelumbo nucifera HOM05D001061 ORTHO05D006729 4.3e-91 338.6 211 78.2
vmacro06688 Vaccinium macrocarpon HOM05D001061 ORTHO05D006729 1.6e-90 336.7 208 78.4
Haze_13724 Corylus avellana HOM05D001061 ORTHO05D006729 3.7e-90 335.5 201 81.6
Hma1.2p1_2482F.1_g322970 Hydrangea macrophylla HOM05D001061 ORTHO05D006729 4.8e-90 335.1 208 78.8
Hma1.2p1_2482F.1_g322980 Hydrangea macrophylla HOM05D001061 ORTHO05D006729 4.8e-90 335.1 208 78.8
CSS0048539 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D006729 6.2e-90 334.7 208 76.9
VMungo0720G3063 Vigna mungo HOM05D001061 ORTHO05D006729 6.2e-90 334.7 203 81.8
Cfa008311 Carpinus fangiana HOM05D001061 ORTHO05D006729 2.4e-89 332.8 201 81.1
Lalb_Chr06g0161081 Lupinus albus HOM05D001061 ORTHO05D006729 2.4e-89 332.8 208 80.8
Hund11753 Selenicereus undatus HOM05D001061 ORTHO05D006729 5.3e-89 331.6 217 74.7
AUR62015994 Chenopodium quinoa HOM05D001061 ORTHO05D006729 9.0e-89 330.9 208 76.9
AUR62021201 Chenopodium quinoa HOM05D001061 ORTHO05D006729 2.0e-88 329.7 208 76.4
CANSAT21G0044 Cannabis sativa HOM05D001061 ORTHO05D006729 7.6e-88 327.8 204 78.9
QL09p014380 Quercus lobata HOM05D001061 ORTHO05D006729 7.6e-88 327.8 204 78.9
CiPaw.03G105500 Carya illinoinensis HOM05D001061 ORTHO05D006729 9.9e-88 327.4 217 75.1
Phvul.007G069100 Phaseolus vulgaris HOM05D001061 ORTHO05D006729 9.9e-88 327.4 217 75.6
Rhsim03G0180100 Rhododendron simsii HOM05D001061 ORTHO05D006729 4.9e-87 325.1 201 79.6
Cc02_g03080 Coffea canephora HOM05D001061 ORTHO05D006729 6.4e-87 324.7 217 73.7
Potri.015G142900 Populus trichocarpa HOM05D001061 ORTHO05D006729 8.4e-87 324.3 209 77.0
Aqoxy7G00378 Aquilegia oxysepala HOM05D001061 ORTHO05D006729 1.1e-86 323.9 212 76.4
Lj1A996G55 Lonicera japonica HOM05D001061 ORTHO05D006729 1.1e-86 323.9 208 77.9
MD07G1267600 Malus domestica HOM05D001061 ORTHO05D006729 1.1e-86 323.9 208 77.9
Manes.14G026600 Manihot esculenta HOM05D001061 ORTHO05D006729 3.2e-86 322.4 208 77.9
Peaxi162Scf01452g00006 Petunia axillaris HOM05D001061 ORTHO05D006729 4.2e-86 322.0 209 75.6
Prupe.2G293300 Prunus persica HOM05D001061 ORTHO05D006729 7.1e-86 321.2 217 74.2
Ah.07g207270 Amaranthus hybridus HOM05D001061 ORTHO05D006729 9.3e-86 320.9 203 76.8
C07p54390 Brassica napus HOM05D001061 ORTHO05D006729 2.1e-85 319.7 214 72.9
BolC7t45925H Brassica oleracea HOM05D001061 ORTHO05D006729 4.6e-85 318.5 214 72.4
Glyma.20G157600 Glycine max HOM05D001061 ORTHO05D006729 4.6e-85 318.5 203 79.3
RcHm_v2.0_Chr1g0377121 Rosa chinensis HOM05D001061 ORTHO05D006729 4.6e-85 318.5 208 76.0
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 6.0e-85 318.2 209 76.6
GSVIVG01010538001 Vitis vinifera HOM05D001061 ORTHO05D006729 6.0e-85 318.2 194 78.9
BraA03t14678Z Brassica rapa HOM05D001061 ORTHO05D006729 1.0e-84 317.4 214 72.9
ECA233G1964 Erigeron canadensis HOM05D001061 ORTHO05D009717 1.0e-84 317.4 211 74.9
DCAR_009363 Daucus carota HOM05D001061 ORTHO05D006729 1.3e-84 317.0 217 73.3
A03p56070 Brassica napus HOM05D001061 ORTHO05D006729 2.3e-84 316.2 214 72.4
Oeu022585.1 Olea europaea HOM05D001061 ORTHO05D006729 3.0e-84 315.8 208 76.0
SalBow4G2537 Salvia bowleyana HOM05D001061 ORTHO05D006729 3.0e-84 315.8 209 77.5
Ciclev10004302m.g Citrus clementina HOM05D001061 ORTHO05D006729 8.7e-84 314.3 209 77.0
Migut.F00349 Erythranthe guttata HOM05D001061 ORTHO05D006729 8.7e-84 314.3 217 73.3
Sed0018541 Sechium edule HOM05D001061 ORTHO05D006729 8.7e-84 314.3 203 74.9
TWI23G0875 Tripterygium wilfordii HOM05D001061 ORTHO05D006729 8.7e-84 314.3 217 70.5
CAN.G913.1 Capsicum annuum HOM05D001061 ORTHO05D006729 1.1e-83 313.9 209 75.1
MELO3C006901.2 Cucumis melo HOM05D001061 ORTHO05D006729 1.9e-83 313.2 203 74.4
EL10Ac3g05663 Beta vulgaris HOM05D001061 ORTHO05D006729 2.5e-83 312.8 217 71.0
Sp7g23570 Schrenkiella parvula HOM05D001061 ORTHO05D006729 3.3e-83 312.4 214 72.4
AT4G25540 Arabidopsis thaliana HOM05D001061 ORTHO05D006729 4.3e-83 312.0 214 72.4
Sc25g0000470 Simmondsia chinensis HOM05D001061 ORTHO05D006729 4.3e-83 312.0 217 71.0
CsaV3_3G017020 Cucumis sativus L. HOM05D001061 ORTHO05D006729 5.6e-83 311.6 203 73.9
Duzib205G0347 Durio zibethinus HOM05D001061 ORTHO05D006729 5.6e-83 311.6 204 76.5
ClCG05G007980 Citrullus lanatus HOM05D001061 ORTHO05D006729 7.4e-83 311.2 205 74.1
Thhalv10024274m.g Eutrema salsugineum HOM05D001061 ORTHO05D006729 7.4e-83 311.2 212 73.6
Lsat_1_v5_gn_8_8260 Lactuca sativa HOM05D001061 ORTHO05D006729 7.4e-83 311.2 209 76.1
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 9.6e-83 310.8 217 71.0
Thecc.03G175500 Theobroma cacao HOM05D001061 ORTHO05D006729 9.6e-83 310.8 217 71.4
SGA_v2.0_scaffold44G16715 Striga asiatica HOM05D001061 ORTHO05D006729 1.6e-82 310.1 203 75.4
CARHR232960 Cardamine hirsuta HOM05D001061 ORTHO05D006729 3.7e-82 308.9 214 71.5
Solyc03g025890.2 Solanum lycopersicum HOM05D001061 ORTHO05D006729 3.7e-82 308.9 209 73.2
Carub.0007s1544 Capsella rubella HOM05D001061 ORTHO05D006729 4.8e-82 308.5 214 72.4
Nitab4.5_0003365g0010 Nicotiana tabacum HOM05D001061 ORTHO05D006729 4.8e-82 308.5 210 72.4
Sopen03g004700 Solanum pennellii HOM05D001061 ORTHO05D006729 3.1e-81 305.8 209 72.7
AL7G27560 Arabidopsis lyrata HOM05D001061 ORTHO05D006729 5.3e-81 305.1 214 70.1
Gohir.A12G258300 Gossypium hirsutum HOM05D001061 ORTHO05D006729 6.9e-81 304.7 217 71.4
THA.LOC104811986 Tarenaya hassleriana HOM05D001061 ORTHO05D006729 1.2e-80 303.9 212 72.6
HanXRQChr05g0141231 Helianthus annuus HOM05D001061 ORTHO05D006729 2.0e-80 303.1 208 74.0
FvH4_7g29360 Fragaria vesca HOM05D001061 ORTHO05D006729 7.6e-80 301.2 208 75.0
FAN03G0437 Fragaria x ananassa HOM05D001061 ORTHO05D006729 1.3e-79 300.4 208 74.5
FAN10G0894 Fragaria x ananassa HOM05D001061 ORTHO05D006729 1.3e-79 300.4 208 74.5
PGR142G2564 Punica granatum HOM05D001061 ORTHO05D006729 1.3e-79 300.4 223 70.9
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.9e-79 299.3 208 74.0
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 4.9e-79 298.5 208 74.0
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 6.5e-79 298.1 208 74.5
PSO675G8279 Papaver somniferum HOM05D001061 ORTHO05D006729 8.4e-79 297.7 218 69.7
SHI13790 Sapria himalayana HOM05D001061 ORTHO05D006729 1.4e-78 297.0 217 67.7
Gohir.D12G259600 Gossypium hirsutum HOM05D001061 ORTHO05D006729 5.5e-78 295.0 217 70.0
Gorai.008G278000 Gossypium raimondii HOM05D001061 ORTHO05D006729 5.5e-78 295.0 217 70.0
Atru.chr1.472 Acer truncatum HOM05D001061 ORTHO05D006729 1.2e-77 293.9 213 70.9
Aa31sc165G10 Aethionema arabicum HOM05D001061 ORTHO05D006729 2.1e-77 293.1 208 70.2
Eucgr.K00248 Eucalyptus grandis HOM05D001061 ORTHO05D006729 4.6e-77 292.0 203 70.4
HPP92_020859 Vanilla planifolia HOM05D001061 ORTHO05D006729 1.0e-76 290.8 213 70.0
CDE11G1074 Ceratophyllum demersum HOM05D001061 ORTHO05D006729 2.3e-76 289.7 208 69.2
unitig_46.g18782 Utricularia gibba HOM05D001061 ORTHO05D006729 2.3e-76 289.7 217 66.4
BcaC06g32803 Brassica carinata HOM05D001061 ORTHO05D006729 1.5e-75 287.0 208 68.3
ATR0680G072 Amborella trichopoda HOM05D001061 ORTHO05D006729 3.3e-75 285.8 212 68.4
MBI18_g09768_MAGBIO Magnolia biondii HOM05D001061 ORTHO05D006729 6.3e-74 281.6 215 66.5
Nitab4.5_0000716g0140 Nicotiana tabacum HOM05D001061 ORTHO05D006729 1.8e-73 280.0 176 78.4
Psat4g089160 Pisum sativum HOM05D001061 ORTHO05D006729 2.2e-71 273.1 194 72.7
Pp3c2_16220 Physcomitrium patens HOM05D001061 ORTHO05D006729 1.5e-67 260.4 219 61.2
Pp3c2_16228 Physcomitrium patens HOM05D001061 ORTHO05D006729 1.5e-67 260.4 219 61.2
SMO116G0252 Selaginella moellendorffii HOM05D001061 ORTHO05D006729 1.7e-66 256.9 210 63.8
CBR_g38452 Chara braunii HOM05D001061 ORTHO05D006729 3.1e-65 252.7 253 53.4
SEGI_11976 Sequoiadendron giganteum HOM05D001061 ORTHO05D006729 3.1e-65 252.7 216 60.2
Mapoly0043s0063 Marchantia polymorpha HOM05D001061 ORTHO05D006729 1.7e-63 246.9 226 54.0
Eucgr.L01884 Eucalyptus grandis HOM05D001061 ORTHO05D006729 7.2e-62 241.5 162 72.2
Os04g0682900 Oryza sativa ssp. japonica HOM05D001061 ORTHO05D006729 7.4e-59 231.5 215 58.6
Zm00001eb434000 Zea mays HOM05D001061 ORTHO05D006729 5.0e-55 218.8 214 53.7
Cfa027083 Carpinus fangiana HOM05D001061 ORTHO05D006729 2.2e-42 176.8 230 44.8
MCO07G196 Micromonas commoda HOM05D001061 ORTHO05D006729 1.7e-39 167.2 226 44.2
PRCOL_00004183 Prasinoderma coloniale HOM05D001061 ORTHO05D006729 1.0e-31 141.4 250 36.4
TAR636G0015 Trochodendron aralioides HOM05D001061 ORTHO05D006729 1.8e-28 130.6 93 68.8
MELO3C029137.2 Cucumis melo HOM05D001061 ORTHO05D006729 1.7e-26 124.0 93 66.7
Cpa.g.sc107.43 Carica papaya HOM05D001061 ORTHO05D006729 6.6e-23 112.1 78 71.8
SMO195G0034 Selaginella moellendorffii HOM05D001061 ORTHO05D006729 8.0e-13 78.6 81 50.6
SMO047G0001 Selaginella moellendorffii HOM05D001061 ORTHO05D006729 1.1e-12 78.2 81 50.6
SMO195G0022 Selaginella moellendorffii HOM05D001061 ORTHO05D006729 1.4e-12 77.8 81 50.6
SMO195G0050 Selaginella moellendorffii HOM05D001061 ORTHO05D006729 1.4e-12 77.8 81 50.6
CANSAT25G3364 Cannabis sativa HOM05D001061 ORTHO05D006808 1.8e-12 77.4 205 29.8
SMO195G0039 Selaginella moellendorffii HOM05D001061 ORTHO05D006729 4.0e-12 76.3 81 49.4
Nn3g21675 Nelumbo nucifera HOM05D001061 ORTHO05D006808 6.8e-12 75.5 208 30.3
Aqoxy2G02780 Aquilegia oxysepala HOM05D001061 ORTHO05D006808 7.5e-11 72.0 205 26.8
ECA236G3964 Erigeron canadensis HOM05D001061 ORTHO05D006808 1.7e-10 70.9 205 27.3
Solyc01g079520.3 Solanum lycopersicum HOM05D001061 ORTHO05D006808 1.7e-10 70.9 205 28.3
Thecc.01G312500 Theobroma cacao HOM05D001061 ORTHO05D006808 1.7e-10 70.9 205 27.8
AagrBONN_evm.TU.Sc2ySwM_228.348 Anthoceros agrestis HOM05D001061 ORTHO05D006808 2.2e-10 70.5 205 28.3
Sopen01g031290 Solanum pennellii HOM05D001061 ORTHO05D006808 2.2e-10 70.5 205 27.8
Os09g0407600 Oryza sativa ssp. japonica HOM05D001061 ORTHO05D006808 3.7e-10 69.7 205 27.3
Cre05.g235750 Chlamydomonas reinhardtii HOM05D001061 ORTHO05D006808 4.9e-10 69.3 217 30.0
HPP92_026957 Vanilla planifolia HOM05D001061 ORTHO05D006808 4.9e-10 69.3 205 28.8
Zm00001eb312280 Zea mays HOM05D001061 ORTHO05D006808 6.4e-10 68.9 206 29.1
BcaB01g02414 Brassica carinata HOM05D001061 ORTHO05D006808 1.4e-09 67.8 205 27.3
AT4G02070 Arabidopsis thaliana HOM05D001061 ORTHO05D006808 2.4e-09 67.0 205 27.3
CSS0018335 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D006808 2.4e-09 67.0 206 27.7
PSO761G0517 Papaver somniferum HOM05D001061 ORTHO05D006808 2.4e-09 67.0 204 26.5
CARHR249610 Cardamine hirsuta HOM05D001061 ORTHO05D006808 3.2e-09 66.6 205 27.3
PSO210G6116 Papaver somniferum HOM05D001061 ORTHO05D006808 3.2e-09 66.6 204 26.5
CSS0047021 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D006808 4.1e-09 66.2 206 27.2
BraA03t12306Z Brassica rapa HOM05D001061 ORTHO05D006808 5.4e-09 65.9 205 26.3
Thhalv10028364m.g Eutrema salsugineum HOM05D001061 ORTHO05D006808 5.4e-09 65.9 205 26.3
Sc17g0000490 Simmondsia chinensis HOM05D001061 ORTHO05D006808 5.4e-09 65.9 206 27.2
Gohir.D07G132500 Gossypium hirsutum HOM05D001061 ORTHO05D006808 7.0e-09 65.5 205 26.8
Gorai.001G143900 Gossypium raimondii HOM05D001061 ORTHO05D006808 7.0e-09 65.5 205 26.8
BolC3t16097H Brassica oleracea HOM05D001061 ORTHO05D006808 9.2e-09 65.1 205 25.9
CAN.G777.8 Capsicum annuum HOM05D001061 ORTHO05D006808 1.2e-08 64.7 205 26.3
AL6G51170 Arabidopsis lyrata HOM05D001061 ORTHO05D006808 1.6e-08 64.3 205 26.8
A03p31260 Brassica napus HOM05D001061 ORTHO05D006808 1.6e-08 64.3 205 25.9
Carub.0006s3516 Capsella rubella HOM05D001061 ORTHO05D006808 1.6e-08 64.3 205 26.8
Actinidia21002 Actinidia chinensis HOM05D001061 ORTHO05D006808 2.1e-08 63.9 206 27.2
AUR62021519 Chenopodium quinoa HOM05D001061 ORTHO05D007103 4.6e-08 62.8 213 27.7
Medtr7g109470 Medicago truncatula HOM05D001061 ORTHO05D006808 6.0e-08 62.4 205 27.8
Sp6g01950 Schrenkiella parvula HOM05D001061 ORTHO05D006808 6.0e-08 62.4 206 26.7
TPR.G4121 Trifolium pratense HOM05D001061 ORTHO05D006808 1.3e-07 61.2 206 26.7
AUR62011008 Chenopodium quinoa HOM05D001061 ORTHO05D007103 2.3e-07 60.5 213 27.7
Sed0018816 Sechium edule HOM05D001061 ORTHO05D007103 2.3e-07 60.5 207 27.5
Ca_09207_v3 Cicer arietinum L. HOM05D001061 ORTHO05D006808 3.0e-07 60.1 205 24.9
ClCG11G002520 Citrullus lanatus HOM05D001061 ORTHO05D007103 3.0e-07 60.1 207 27.1
DCAR_010445 Daucus carota HOM05D001061 ORTHO05D007103 3.0e-07 60.1 206 24.8
Psat3g020000 Pisum sativum HOM05D001061 ORTHO05D006808 5.0e-07 59.3 206 26.2
Pp3c9_1020 Physcomitrium patens HOM05D001061 ORTHO05D007103 6.6e-07 58.9 188 28.7
CsaV3_2G002320 Cucumis sativus L. HOM05D001061 ORTHO05D007103 8.6e-07 58.5 207 27.1
Nitab4.5_0008811g0030 Nicotiana tabacum HOM05D001061 ORTHO05D006808 8.6e-07 58.5 206 26.7
Pp3c20_1350 Physcomitrium patens HOM05D001061 ORTHO05D006808 8.6e-07 58.5 206 28.6
AagrBONN_evm.TU.Sc2ySwM_117.3304 Anthoceros agrestis HOM05D001718 ORTHO05D008006 3.3e-06 56.6 207 28.0
Nitab4.5_0001301g0050 Nicotiana tabacum HOM05D001061 ORTHO05D006808 7.3e-06 55.5 206 26.2
Gohir.A07G128100 Gossypium hirsutum HOM05D001061 ORTHO05D006808 9.5e-06 55.1 192 25.5
SMO195G0055 Selaginella moellendorffii HOM05D001061 ORTHO05D006729 9.5e-06 55.1 54 50.0


User provided reference genes

Program Settings