Gene: PGR142G2564
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR142G2564
- Transcript Identifier PGR142G2564.01
- Gene Type Coding gene
- Location NC_045128.1 : 43544885-43550918 : positive
Gene Family Information
- ID HOM05D001061
- #Genes/#Species 575/100
- Phylogenetic origin
- ID ORTHO05D006729
- #Genes/#Species 139/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pid XP_031378151.1
- name LOC116193547
- name XM_031522291.1
- id gene-LOC116193547
- uniprot A0A6P8C8Y9
Descriptions
- product DNA mismatch repair protein MSH3
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006298 | IEA | GOA Database | mismatch repair | |
| GO:0006298 | IEA | InterPro | mismatch repair | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0030983 | IEA | GOA Database | mismatched DNA binding | |
| GO:0030983 | IEA | InterPro | mismatched DNA binding | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G25540 |
| GO:0003684 | ISO | PLAZA Integrative Orthology | damaged DNA binding | AT4G25540 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007860 | DNA mismatch repair protein MutS, connector domain |
| IPR007695 | DNA mismatch repair protein MutS-like, N-terminal |
| IPR016151 | DNA mismatch repair protein MutS, N-terminal |
| IPR000432 | DNA mismatch repair protein MutS, C-terminal |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR007696 | DNA mismatch repair protein MutS, core |
| IPR045076 | DNA mismatch repair MutS family |
| IPR036678 | MutS, connector domain superfamily |
| IPR036187 | DNA mismatch repair protein MutS, core domain superfamily |
| IPR017261 | DNA mismatch repair protein MutS/MSH |
| Mapman id | Description |
|---|---|
| 14.7.1.2 | DNA damage response.mismatch repair (MMR).MSH2-x mismatch repair heterodimer components.component MSH3 |