Gene: Solyc03g025890.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g025890.2
  • Transcript Identifier Solyc03g025890.2.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 3278302-3298185 : positive

Gene Family Information

  • ID HOM05D001061
  • #Genes/#Species 575/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g025890.2.1
  • uniprot A0A3Q7FEW1
  • gene_id Solyc03g025890

Descriptions

  • Description DNA mismatch repair protein MutS (AHRD V3.3 *** A0A200QUI6_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043570
IBA
GOA Databasemaintenance of DNA repeat elements
GO:0051096
IBA
GOA Databasepositive regulation of helicase activity
GO:0006298
IBA
IEA
GOA Databasemismatch repair
GO:0006298
IEA
InterPromismatch repair
GO:0006312
IBA
GOA Databasemitotic recombination
GO:0007131
IBA
GOA Databasereciprocal meiotic recombination
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008094
IBA
GOA DatabaseATPase, acting on DNA
GO:0003684
ISO
PLAZA Integrative Orthologydamaged DNA binding AT4G25540
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G25540
GO:0030983
IBA
IEA
GOA Databasemismatched DNA binding
GO:0030983
IEA
InterPromismatched DNA binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0032135
IBA
GOA DatabaseDNA insertion or deletion binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032302
IBA
GOA DatabaseMutSbeta complex
GO:0032300
IBA
GOA Databasemismatch repair complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036678 MutS, connector domain superfamily
IPR016151 DNA mismatch repair protein MutS, N-terminal
IPR017261 DNA mismatch repair protein MutS/MSH
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR000432 DNA mismatch repair protein MutS, C-terminal
IPR007696 DNA mismatch repair protein MutS, core
IPR036187 DNA mismatch repair protein MutS, core domain superfamily
IPR045076 DNA mismatch repair MutS family
IPR007695 DNA mismatch repair protein MutS-like, N-terminal
IPR007860 DNA mismatch repair protein MutS, connector domain
Mapman id Description
14.7.1.2 DNA damage response.mismatch repair (MMR).MSH2-x mismatch repair heterodimer components.component MSH3